RNA id: AMCG00016642


Basic Information

Item Value
RNA id AMCG00016642
length 1309
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00016642
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26662086 ~ 26664301 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCTGCTGCAGGACTGTCGTGTGCCGGGCCAAGCAATGGCAGCTCTCTGTGCGGCTCTCCTCTTGGTGCTGCTTGTGTGCGTGGGGGGGCAGTCGACCCCGGGCTCCTGCCGCATCTCCTGTGACCCTCTCCTCACTCGGGATGGCACGGTCACCGGCTTGGAGCAAGGGCTGGTCATCCCCCTGTCCACAGCGCCCACTGGACCCCCGGGCAAGATGGGTCCCCCAGGGAAGGCAGGGCCCCGTGGTCTGCCAGGCATAGCGGGGGTCCCTGGGCCACCGGGAAGTCCCGGGAGAACAAGAGGCTCCAAAATCGCCTTCTACGCATCACTCACCGGCGCCTTCAAAGACCAGGATGTTCTGAGGTTCACGGACGTGGTGACCAACCTGGGCGACAGCTACGACCCCGGCACCGGAGTGTTCACCTGCAGGGTGTCCGGCACCTACGCCTTCAGCTACCACATCCTGAAGGAGGGAGGAGACATGTGGGCCGACCTGCTGCTCAACGACCAGGTGCACGCCAGCTCCATTGCCCAGGACGCCAACCGGAAGTTTGACTATGCGGCCAACAGCGTGGTCCTGCAGTTGCAGGTGGGGGACAGGGTCTGTGTGAAGCTGGACGGTGGGCAGGTCATGGAGGACTCAGCTGGGGGGCGGTACAGCACGTTCTCCGGCTTCCTGCTGTTCGAGGACTGAGTCCAGAGAGCTCGGCCTGCACAGAGCGACTCCAGTGCAGCCAGGCCTCCCTCCCCTGAGCCTTTCCTCCCCTCCCTCGGTGTAACTGTGTTTCACAGGACAGAGCGAGATCCTGGTCCCAAATCTTCAGAGCTGGTCAAGAGTTTCCTAACTCATAAGAGAGGGCAGTGCGTGAGGGTTTAACAAAGTGACTGTGTTGCACTGACAGTTTATCTTCTCACTCAGAATGACTGGGggagtgtaataataatagagaaaaATTATCAACACAGACATTTTATAGATGAAGTAGTTTAGCAGCCAAGGAGCCCCCGGCGCGTGTAGTGGCTGCAGGGCTCGGAGTGAAGGCTGTGCTCTCCAGGAGAACGAAGAGAGCAGCCTTGCTGCAGCCGCCTGCTCCGGCCGATCACTTTTCAACCCCACAGCGCTGCACATGCAAGGTTTCTTATTTGCAGTTGAAGCAGAAGCAGGGGTGTGGGGACTTTACGTGCAGGACAGTGCTGATTTAACAATGACTACTTAGCTGCTGGTTGCACTGAAAGACCTGATCCATCCTGTGCCGCTCATGTAtgatcaataaaacaataaaagaaaatttACTCTTGAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18464 lncRNA downstream 30211 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 69786 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 139039 26522804 ~ 26523047 (-) True G14832
TU18414 lncRNA downstream 193987 26463782 ~ 26468099 (-) False G14818
TU18490 lncRNA upstream 76784 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 314857 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 330872 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 579665 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 599412 27263713 ~ 27265603 (-) True G15001
AMCG00016645 mRNA downstream 1346 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016644 mRNA downstream 18593 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016643 mRNA downstream 70559 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016634 mRNA downstream 215266 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 280357 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016649 mRNA upstream 57486 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016648 mRNA upstream 79283 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016651 mRNA upstream 152507 26816808 ~ 26822326 (-) True AMCG00016651
AMCG00016653 mRNA upstream 168893 26833194 ~ 26839113 (-) True AMCG00016653
AMCG00016652 mRNA upstream 208594 26872895 ~ 26886881 (-) True AMCG00016652
TU18445 other downstream 90445 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 90445 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 141689 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 143807 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 420980 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 604519 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 705289 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 737375 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 760592 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2117171 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile