RNA id: AMCG00016649


Basic Information

Item Value
RNA id AMCG00016649
length 990
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00016649
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26721787 ~ 26732090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACAGAAGGTGGTTCTGATAACCGGCTGCTCCTCCGGGATTGGACTGGCCATGGCAGCCCATCTGGCCAAGGACAGCCAGCAGCGTTTCAAAGAAAGAGAGCACTTCACAGCAGCCAGAAAAGGCTTCTGCAGATACATGTTTATCCCTCTGAATCTCACAAGCAGAAATGAGGTGGTGGGCGAGGCGCTGGGCCACACGCTGGAGATCAAGCAGATGGACGTGTGCAACGAAGACTCCATCCACGCCTGCGTAGACAGCATCCCTGACCGGCACATTGATGTTGTGGTCAACAATGCTGGGGTGGGCATGATCGGGCCTATCGAGTGCCAGAGCATTGAGGAGATGAAGGGCGTGTTTGAAACCAATTTTTTCGGCGTGGTGCGGGTGATAAAGGAGGTGTACCCTGAcatgaagaagaggaggagcGGCCATATCGTGGTCATTAGCAGCGTGATGGGGCTGCAGGGGATCATGTTTAATGATGTCTACACCGCCTCTAAGTTTGCCATAGAAGGTTTCTGTGAGAGTCTGGTAATACAGTCACTTAACTTCAATGTCTTTATCAGTCTGATTGAGCCGGGCCCCGTGGTGACAGAGTTCGAGATGAAGGCGTACACCGATGCAGAGAGCAGCGATTACTCCGGCACCGACCCTGAGACAGCGGAGATGTTCACCGGCATGTACATCAACAACTCCAGAGCCATCTTCAGCAGCCTGGGCCAGAGCCCCGAGGACATCGCCGAGCACCTGGTCAAGGTCCTCACGGCAGAGGTGCCCCCTTTCCGGCACCAGACCAATGCGATGTACACACCACTGACCGCGCTGAAGCATGCCGACCCCACCGGCAAGCTGGCCAATGATGTCTTCTACAAGATGGTATTCCAGTATGACCATGTGATGAAGGCCAGCCTGGCCTGCTTCCGGGTGATGCGCTGGAAGGCACAGAAGGTCAACAATGGCATGAAGATGCTGGGGCTGAAGTGA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11150 RDH8; retinol dehydrogenase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18464 lncRNA downstream 89912 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 129487 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 198740 26522804 ~ 26523047 (-) True G14832
TU18414 lncRNA downstream 253688 26463782 ~ 26468099 (-) False G14818
TU18490 lncRNA upstream 8995 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 247068 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 263083 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 511876 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 531623 27263713 ~ 27265603 (-) True G15001
AMCG00016642 mRNA downstream 57486 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016645 mRNA downstream 61047 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016644 mRNA downstream 78294 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016643 mRNA downstream 130260 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016634 mRNA downstream 274967 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016648 mRNA upstream 11494 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016651 mRNA upstream 84718 26816808 ~ 26822326 (-) True AMCG00016651
AMCG00016653 mRNA upstream 101104 26833194 ~ 26839113 (-) True AMCG00016653
AMCG00016652 mRNA upstream 140805 26872895 ~ 26886881 (-) True AMCG00016652
AMCG00016657 mRNA upstream 156244 26888334 ~ 26891932 (-) True AMCG00016657
TU18445 other downstream 150146 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 150146 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 201390 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 203508 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 480681 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 536730 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 637500 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 669586 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 692803 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2049382 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile