RNA id: AMCG00016662


Basic Information

Item Value
RNA id AMCG00016662
length 3208
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00016662
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26995173 ~ 27003707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggcagacaggagagagactgAATCAAAGCGAGCCAGCGCCGGGACCTGGCGAAatgcactcactcactcactcactcactcactcacacacgcatgcatgcatgcatgacATTGCAGCGCTACATTTACTCTAACAATAGCGGGTCGTGGTAGGCTGTTGCATACGCCGCTGTCAGCAAGATCTCGttcaaaaaatgtgtgtgttggggggggcgGGGATATTACTAGAATTTACTCGATGTTTTTCAGTTCGATTCAGTCAGAACATGATGCTGatgctgatgctgctgctgatgatgctCTTCCAGGCGCTGATGCACACATgcaggcgtgtgtgtgtattaacgGTGTTGTGTTGTAAGTTGGTGCGTTTTGAACACGTCCGCGATCTGGCCAGCCTGCAGCTTTATTTGTAGCTGCCGGGCAGGCGGGGGTTAAACCCGCTTGACTGGGAGTCTGTAGTCACCGGCCACATCACCGAGCAGGCGTGCATGGAGGAGCACTGTTTATGAATTAATGTCTCTGCGGTCAGACGTGCTCGCCATCATGGGTGTTGATTGAATGGCGAGTTGTGTTGAGCTGGTGTGTTTCCTGTGATCGCTGCCTTATTAATAACACGCTTTGCTGCTGTTGCATGATGTGGTGTTaagagaggagggagggcagTCTTGTTCACTTGCAGATTTCGTGCATCGTAGTCTATAGAGGGAACTGCATGCTGCTTTTACTAAGAGAGAATAATGTGAAGAattgtttcaatacatttaaccCGTTAATACTTTGCATAAAGAGGTCTgcctttaaaataatgcatcattttaaaatactctggTTGAGAAACGTGTTATTGGGATGTTTTCGGGTTTATCGTGGAGGCTGTAGTTTCAGTCCTGTAATGCGGTGCTATTGTTGTACTGCGTTGTTGTCGAGAATTGACACATTGTTGCCATTCAGACCTGAGGCAGATGCATCACAAGAGTGCGTATTTCTTCAGTttcaaatgtgacatttttgaATGAGCTCCGTGCATCACACAAGTGAAGTCGGGTGTCAGTCAGGATGCTTGATTTGAGCTGGACGTGATTAAAGCATTAAACACACAGTTGCTTTTCTGTCAGTTGCAGCGCTGGGGCGACGCGGTCCCCTGTGCCGTCGTGTGCGCAGGGCGGCCCGGGCTCAGGGGGCAGTGTAGCCCGGGAGAGAGACCTGTTTACCTCCCCTCTCCTCACACGGCCCCAGTCCGCTGAACCATCGGCCATTGCTGCGAGAATTAACCTTGTGGGTTCCGTCAtgacaataaacaaaatgataaatatgTTGAATAGATTGCTCACTGCTGTGATTGGAATGATCTTAATgagtgtaataataatcataaggAAGCATAACAGTATTAGTACTCAGCAGCCCCAGTGTCAGAGCTGTTCAGAGGACATGCCCCCTGTACCCCACAGAGCAGGAAGCAGAATGACCCCAGTGGCTGCCAGTGACGCACCTCCTGCAcagcattgttgttgtttttgctgtttttaagcCTGCAGGGGCCCTGGAGCTAAACTGACTGATCTGCATTGAGTGTGAAACTGAATACAAACCAACAAAGTTACACACATAGTGGGGAAAAGAGGCTAGACTGTATTCTCCAGCTGCTACTACTGCTTTGATGTCCTCTAAAGGAATCGGTGTGTCGAAAGACAGCCAAGGGATACGGCATGCCTGCTGATACAGTGAGCGAGGGtttaacacactcctaccacgcAGTGTCTAACACTCCTTAACACACTGCCCATTCAGAGTCGTTCTTTAATGCACATGGGCTAGTCCCGCTCCAGGCCCCGTGTGCGAACCGGCAGGATCGTCCGGCCTGCACGGGGGAAAACGTTCAGACTGCTCTTGCACAGCAGCTGCCTTCAACATGGGCTGCAGCCCTCCGCCGGTACAGCAGTCTGTACAGGTGATCCAGGAGAGCACGGCATGTGATATCACACTAaccatgtgtgcgtgtgcaagGGTAAACTCTGGGTCTAACCTCGTGCAGTCCAGGTTCGGTGTGCGTGCCACAGACTCTGACACTGGTCTGCTAATGGGTCCACCTACTGTGCAGTGGAGAGCTGTACCTGCTTTGCCCTGTGATGCCATGTGTTTCAAGTTCTTCCTTTAACCCCTGTGATTTCTTTCCCCCTGCCACGTGATTCATGACCCACTGACCTTTCACCCTGTTTAGCTCTGTTGACGTTGAAAAGGACCGCGCTCGTTCGAGTGCCTCCTCCCGACGAGCATGAGTCAGCCTTCAGAGCCCAGTTACGATGCTCCCACTATTAAAGCAGCCCCACAGACCGAATCCAAGCTGGCGTCCACAGCGGGGAAGAAGCAGAACAAGAAGAAGgtggaggagctgctggaggaggaggaggaggagtatgTGGTAGAGAAGGTGCTGGACCGGCGGGTGGTCAAGGGGAAGGTGGAGTACCTGCTGAAGTGGAAGGGCTTCTCTGACGAGGACAATACCTGGGAGCCAGAGGAGAACCTGGACTGCCCAGACCTGATCGCCGAGTTCCTGCAGTCCCAGAAAACTGCACACGAGACGGAGAAGGCCGAGTCGGGCGGCAAGAGGAAGGGGGAGTCTGACAGCGAGGCAGCCGGGGAGGAGAGCCGGCAGAAGAAGAGGAAAGAAGagtcagagAAACCCAGAGGCTTTGCCCGAGGCCTGGAGCCTGAGAGGATCATCGGAGCGACCGACTCCAGTGGGGAGCTGATGTTTCTGATGAAGTGGAAAAATTCAGACGAGGCAGACCTGGTCCCGGCGAAGGAGGCGAACGAGAAGTGCCCCCAGGTGGTGATCTCCTTCTACGAGGAGCGGCTGACGTGGCACTCGTACCCGTCTGAGGAGGAggacaagaaagaggacaagaACTAGCCCGGCGGGACAGGGGAGGAGAGAcgccttttgttttaatttttttgttttttcgcTGCTGTCGTCTTGcgttttttttacaaaactggACTGAGGAGAAGGAGGTGGTCTCTCTCGCacccttcctccccctctccctccccctctctgtctcgctGACCAGTTGAGGAGTGGGAGCatgtgaggggagggagggggcagggatGGGTTCTGGGTGATCCTTGGCAGGACTGGCAGCCAGCAAGACACTTGGAAGCAAAGACTTTTAttctcctgccccccccccc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18569 lncRNA downstream 12653 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 253801 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 364264 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 403839 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 473092 26522804 ~ 26523047 (-) True G14832
TU18637 lncRNA upstream 240716 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 260463 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 292835 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 391869 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 409750 27413000 ~ 27413229 (-) True G15071
AMCG00016658 mRNA downstream 21488 26967410 ~ 26974651 (-) True AMCG00016658
AMCG00016656 mRNA downstream 49575 26940980 ~ 26946564 (-) True AMCG00016656
AMCG00016659 mRNA downstream 94395 26901376 ~ 26901744 (-) True AMCG00016659
AMCG00016657 mRNA downstream 104207 26888334 ~ 26891932 (-) True AMCG00016657
AMCG00016652 mRNA downstream 109258 26872895 ~ 26886881 (-) True AMCG00016652
AMCG00016667 mRNA upstream 184586 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016664 mRNA upstream 207273 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016665 mRNA upstream 214208 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016666 mRNA upstream 244310 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016671 mRNA upstream 262637 27265887 ~ 27272025 (-) False AMCG00016671
TU18445 other downstream 424498 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 424498 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 475742 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 477860 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 755033 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 265570 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 366340 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 398426 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 421643 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1778222 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile