RNA id: AMCG00016671


Basic Information

Item Value
RNA id AMCG00016671
length 1066
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00016671
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27265887 ~ 27279334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAATAGCTAAACCACTTGGactataaaacacaacaaatcatAAACCAAGGAAAAGAAGTGTACCTCCAAATGAGTTCCTATTTTGTAAACTCTACTTTCCCCGTGACTCTGCCCGGCGGACAGGAGTCTTTCTTGGGACAGATTCCGTTATATTCCTCCGGATACACGGATCCTTTAAGGCACTACCCCGGCGCAGCCTATGGATCTGCAGGCGTTCCAGACAAGGCTTACCCATCTACTTATTATCAGCAGGCTAACGGTGCCTACGGCCGGGCCAACACAGCCGGAGCCTGTGACTACGCAGCGGCCAGTTTTTACCGAGAGAAGGACCCGGCGTGCGCGCTGTCCAGCCTGGAGGAGCACTCTCTCGGGCTCAGCCAGGAGCAGCGCAAGACAGACTGCTCGgggcagaataaaaacatattcgCTGAAAGTGACGACCAGAAGACATCCGCTCCCGTTTACCCCTGGATGCAGCGCATGAACTCCTGCAACGGGCGATACCCAAATGGCCCCGACTATCAGTTACTAAATTATGGAACTAGCAGTAGCGCTATGAACGGTTCGTACAGGGATTCCGGCACCATGCACTCGGGCTCATACGGCTACAACTACAATGGGATGGACCTAAGCGTCAATCGCTCAACCTCCTCCGGCCACTTTGGGGCTATTGGTGATAACTCCCGGGGTTTTCAGTCTCCGGCCCCGGAGTCCCGGTTCAGGCAGCCGTCTAGCTGCTCTCTATCGTCTCCCGAGTCCCTGCCCTGTTCCAACAGCGAAACTCTCGGACCAAAAAGCTCATCGCCCCCTTCCGATCAGAGCGCCAGCACCGGCAGCAGTAACCTCGCCGCCAACAGCAGCACACATTTCACAGAACTAGACGAGACCAGCGCTTCTTCCGAGACGGAGGAAAGCACCCACAGAGCCAGCAACCCCATTCCCcggacacagcagcagcagcagcagcagcagcagcaggaggcgACTACAACCTCCACCACGGCAGCGGCCGATGGACAAGCACCACAGATATTCCCTTGGATGCGGAAGCTTCACATTAGCCat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18640 lncRNA downstream 284 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 20640 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 262180 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 282401 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 523549 26741085 ~ 26742338 (-) True G14882
TU18659 lncRNA upstream 24060 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 123094 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 140975 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 143628 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 144224 27416249 ~ 27416539 (-) True G15074
AMCG00016666 mRNA downstream 17890 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016665 mRNA downstream 46163 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 52965 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016667 mRNA downstream 70986 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016662 mRNA downstream 262637 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016674 mRNA upstream 14188 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016673 mRNA upstream 14849 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016672 mRNA upstream 27578 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016669 mRNA upstream 65982 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016670 mRNA upstream 98954 27370979 ~ 27375700 (-) True AMCG00016670
TU18445 other downstream 694246 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 694246 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 745490 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 747608 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 1024781 26239082 ~ 26241106 (-) False AMCG00016623
TU18673 other upstream 97565 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 129651 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 152868 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1509447 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2929434 30201459 ~ 30202351 (-) True G15706

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049956 True 1790 mRNA 0.42 2 NC_007114.7 23707691 ~ 23710095 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_01666303_01667765.mRNA True 1202 mRNA 0.48 2 CI01000034 1666064 ~ 1667900 (-)