RNA id: AMCG00016681


Basic Information

Item Value
RNA id AMCG00016681
length 1352
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00016681
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27430102 ~ 27433860 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCAGCAGAGGGGTTTGCTCTCACCCAAGATGGCGGACTGACATCTCTCTCAGCTGCGCAGCCGCGCTACTCTATCCGCGGTACAGGAAGACGTCATCAGCTCTTTCCTGCCTCTGATGCTCAACGTAAACATTCTCAGAAAGAGACAACCAGGAAGCGGCAGCAGATTTTCTTTTCGATTATATTTCTAGATGTATAATCTTTGCCAAAAATTAGAGCAAAGATAATCCGAAGAAActaacaaatttaaaaatgaacccGCAGCAGTATAATCATGCAGTGACGGATCGGTGCATCGGTGATGTGTTGAGCAGTTCACACACGGAGATCAGAGAATAACGCCTGTTATTAacgatttatttatattaacgATTTATTTTGAGCACACCGGCAAGATGCACCGAAGGGGAGTGGGGGCCGGGGCGATTGCCAAGAAAAAGCTCGCAGAGGCAAAGTACAAGGAGCGGGGGACAGTGCTGGCGGAGGACCAGATTGTGCAGATGTCGAAACAGCTGGAGACGTTTAAAACACACCTGGAGGAGTTCGCCAGCAAACACAAGCAGGAGATCCGCAAGAGCGCCCAGTTCCGAGTGCAGTTTCAGGAGATGTGCGCCACCATCGGGGTCGACCCTCTCGCCTCTGGGAAGGGTTTCTGGTCAGAGATGCTGGGCGTGGGGGACTTCTACTACGAGCTGGGGGTCCAGATCATCGAAGTGTGCCTGGCTCTGAAACACAGGAATGGGGGACTGATCACCCTGGATGAGCTCCACCAAAGGGTCCTGAAGGGGAGGGGCAAGTTCGCCCAGGATGTCAGTCAGGATGACCTGATGCGTGCCATCAAAAAGCTGAAGGCGATGGGCACGGGGTTCGGGATGATCCCGGTGGGCGGCTCCTACCTGGTGCAGTCCGTCCCGGCAGAGCTCAACATGGACCACACAGTGGTGCTGCAGCTGGCTGAGAAAAAGGGCTATGTGACGGTGAGCGAGATCAAGGACAACCTGAAGTGGGAGAAGGAGCGAGCCGGACATGTACTGGATCACCTGTTGAAGGAGGGGCTGGCATGGCTGGACAGCCAAGCGGGGGGGGAGCCGCAATATTGGCTGCCTGCTCTCTTCTCCGAGCTGTACTCCTGTGATGTCAGCCCCGAGGAGGCCAATCAGATGGTGCCGTGAGGAGTAGGGTGGGGCAATGCAAAGCACAGCTTTCTGACAGTCACAGAGACACTCAAGACTGTTCATCTCATACTTCGTGAGCCACATGTGCCGAAGAAGGAACCATATTACTACTTAACATCAGGGGAAGTGTCTGGAAAAAgggatttaaataataaaaacaactttttgtaaataa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18746 lncRNA downstream 5281 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 13563 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 14210 27415653 ~ 27415892 (-) True G15073
TU18742 lncRNA downstream 16873 27413000 ~ 27413229 (-) True G15071
TU18737 lncRNA downstream 31519 27395119 ~ 27398583 (-) True G15066
TU18755 lncRNA upstream 101465 27535325 ~ 27541840 (-) True G15079
TU18775 lncRNA upstream 116452 27550312 ~ 27553162 (-) True G15095
TU18848 lncRNA upstream 360732 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 362923 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 368269 27802129 ~ 27805042 (-) True G15172
AMCG00016675 mRNA downstream 49014 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 54402 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 90509 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016672 mRNA downstream 116929 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016673 mRNA downstream 139241 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016688 mRNA upstream 75785 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016692 mRNA upstream 209779 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016693 mRNA upstream 221888 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 267152 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016695 mRNA upstream 298455 27732315 ~ 27738429 (-) True AMCG00016695
TU18749 other downstream 1451 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 26180 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 59963 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 150768 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 858461 26568669 ~ 26571641 (-) True G14843
TU19143 other upstream 1347612 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2767599 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 3092432 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4989198 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 5063647 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile