RNA id: AMCG00016694


Basic Information

Item Value
RNA id AMCG00016694
length 863
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00016694
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27701012 ~ 27707529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGCCCGGCGTTTgaggaaagagaaggagagcaGAGTCCAAGACATCAGAGCAGCGTCGTCTTTTTCAACAGAAGGATTCTGCCTGAAGAACCCAGTCGCCTCTTTTCCTTCCTACCACCTGTAGCGCAAAACATCTCCTTAAAAATGGTGGCCATTCTGAAGCCCTGGAGCGCGGTGCTGGCGCTGGTGCTCTGCGTGCTGGTGTGTCTGGGCACCTTCGTGGATGCCTACCCGCCCAAGCCCGAGAACCCCGGCGAGGACGCCCCGCCAGAGGAGCTGGCCAGATATTACTCTGCGCTGAGGCACTACATCAACCTGATTACGAGACAGAGGTATGGCAAGCGCTCCAGCCCCGAGGCCCTAGTGTCAGACCTGCTGTTTGGTGACAACTCAGACCACAACCAGAGATCACGATACGAGGACTCCTACATGTGGTGATTCCTACctccctttcctctctctctccccatctctcttctctctctctctatcggCCAAGCTGAGGAATCCACCCACCGCCATGGACGGCAACCAACTTGActagaacacaaaaacaacaactctgtcCACTCCCCGGCCCGCTATTCTACAACTGCAAacctctcccttcctcctctgctcctctctgtcccctccctctctctctctctccatccttgCTTCTTACAACACAAACactattgtatataatttattactGAATAAcgagatagaaaaaaaaaacgacaaaaaaatcataaataaatgaaagaaaatcttCAGTCGAATGCACTATATCATAAAGAGAAAATCCTTTattgtttgtaatgtataaATGCTTATGTGCGATTAAAAGTTTAATGGATGATTCAGATGTGATG

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05232 NPY; neuropeptide Y

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18775 lncRNA downstream 147850 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 159172 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 276191 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 284473 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 285120 27415653 ~ 27415892 (-) True G15073
TU18848 lncRNA upstream 87063 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 89254 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 94600 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 103109 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 176110 27883639 ~ 27884430 (-) True G15200
AMCG00016693 mRNA downstream 31600 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016692 mRNA downstream 50163 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016688 mRNA downstream 184039 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 267152 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016675 mRNA downstream 319924 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016695 mRNA upstream 24786 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016700 mRNA upstream 98820 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016701 mRNA upstream 132666 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016709 mRNA upstream 284118 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 384715 28092244 ~ 28107936 (-) True AMCG00016713
TU18749 other downstream 272361 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 297090 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 330873 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 421678 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1129371 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 1073943 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2493930 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2818763 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4715529 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4789978 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile