RNA id: AMCG00016835


Basic Information

Item Value
RNA id AMCG00016835
length 1296
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00016835
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31803037 ~ 31818127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCGATGGAAATCCCCTCCTTGGAGTCCAAAGCAGAACGCATAGCCAGGTACAAAGCGGAGAGACGCAGGGAGCTGGCCGAGAAGTACGGCAACACCGAGGAGCTACCTTCCAAGTACATCCGGAGGGACAGGGAGGCAGTGGATGCCGGCCAGAGAGCCGACGCCAGCCAGAGAGACAGTGCTACGGCCGCAGACTCAAAGGAGAGGGAGGTGCGGAAGCCAGAGCCCTCGGAGTTCAGTCAGGGACCCCATGACATGCATGAACCTCTCTCTCAAGACAGCAATGGTAACTTCAGTGTCAATGTGAACGAGACTGACAGTCTGCCCCATGTTCGAAGCAGCGAGGAGAGGACGGCACGGCTAATGGGAGAGACCCACACCCAAGACCAAGAGCCCCCAGCACTGAAAGTCTCCAACGGCACTGAGACGGACACCTCAGGCCCCAGTCCCCAGTACAGGGAGGTGGACTTGCCCCCCCACCGGCAGTGGTCCAGAGGCTGTGCCACCCTCTACAGCCGTGGTGACACCCCCACAGTGGCAGGCCCAATGCTGCTTCACACACACGTGTCTGTGGGTCACCTAAGGAGTAGCCTACTGCAGACAACGAATGGGAGGCCGGAGGAGAGAGTTAACCCTGACGCCGACCTTGTGGCCTCATCTCTTGACTTGGCAGTGAGGCCGGGGGTCGAGGGGGGGCGTCGCAGGAGCCGCCGCTACCTCCCTGGGGGGGCGGGCAGGAAAACATGCGACCGCTTCAGGACTCAGCCAATCACGGCCGCAGAAGTGCTGGATTCTAATGGCTCCGTGGAAGCCAAGAAAGGCGAAAAGCCCAAAGCTGATGTGAAAACAGATGACAGAGCCAAGATGAGTGTTGCTGCCAAGATGTCTCTGTTTAAAGAGTTGGAGAAGACCATCTCCCCTGAGGCCTCCTCCTTCCTGAAGCCTCGCTCCAGCACTGCTGCCCAAGAGAGACGTGTCCGCCGCTCCGTTGACCGCTCGCGGACACAGCCAATCACCACTGAGGAGATGGTAGTGGCCAACAGCCTCCCAAAAGCAGTGGTGCCAGGCGAGTCCCAGGCTGCGCAGGCCGCTCTGGGGGAGAAGCCCGTGGAGCATGATGAGAACTCCAAACTGACCCTGAGCGAGAAGCTGGCTCTCTTCAACAAGCTGGCCCAGCCGGAGAGTAAGCCCATGCTGCCTCCTGAGGCCGGGGAGTCCAAACGCAGGCAGAAGGGGGCTCGCTACCGCACACAGCCCATCACCATCAATGAAGTAGAGCTGGTAAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19968 lncRNA downstream 31763 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 31763 31770675 ~ 31771274 (-) True G16069
TU19936 lncRNA downstream 83001 31718900 ~ 31720036 (-) True G16043
TU19910 lncRNA downstream 103637 31699136 ~ 31699400 (-) True G16026
TU19907 lncRNA downstream 105429 31693816 ~ 31697608 (-) True G16024
TU20077 lncRNA upstream 387596 32205723 ~ 32206877 (-) True G16154
TU20076 lncRNA upstream 388835 32206962 ~ 32208117 (-) True G16153
TU20119 lncRNA upstream 443422 32261549 ~ 32262666 (-) True AMCG00016847
TU20181 lncRNA upstream 575015 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 598064 32416191 ~ 32416444 (-) True G16245
AMCG00016833 mRNA downstream 1785 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016831 mRNA downstream 40337 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016824 mRNA downstream 128541 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016823 mRNA downstream 149104 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016816 mRNA downstream 399093 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016834 mRNA upstream 21704 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016838 mRNA upstream 26335 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016837 mRNA upstream 161084 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016847 mRNA upstream 443801 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016846 mRNA upstream 451836 32269963 ~ 32284040 (-) True AMCG00016846
TU19613 other downstream 1273537 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1600686 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3017530 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4374386 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4399115 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 604931 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 679380 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 679380 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1357949 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1608361 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04615766_04638586.mRNA True 5044 mRNA 0.50 28 CI01000046 4615766 ~ 4638942 (+)