RNA id: AMCG00016838


Basic Information

Item Value
RNA id AMCG00016838
length 2968
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00016838
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31844462 ~ 31852119 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTGTGCTGTCATTTTGCGCATTTTACGTAGCTCGCTGGAGTAGGTTGCGCTGCCGCTGGTATAAGCCAATCAGGAGAGACCAGGAAGAACAGAGATCGGAATCGCGATCTGTGGCAGGGGTGTCGCTTCACAGCCAGACTTATCGCCAGCAATAATGTGGTTTGCAGCAGCGTTTGGGATTTTAGCTTTCATAGTGTTATTGTACAAATATGTCTGTGGCAGAGCCGGACCCAACCCGTTTGCTGCTGATACGCGGGAACCTCCGAGACCCCTGGTGACGAACaagcaggagaaaaacaaagtccTGAAGCAGGGCTTCCTGGCCAGCAGGGTACCGGAGCACCTCGATGCCATCGTGGTGGGCAGCGGGATCGGGGGGCTGGGGGTGGCGGTGATGCTGGCAAAGGTTGGCAAGAAGGTGCTGGTCCTGGAGCAACACGACCGCGCCGGAGGCTGCTGCCACACCTTCACCGAAAAGGGATTTGAATTTGATGTCGGGATACACTACATCGGAGAACTACTGGAGCACAGGCCTTTCCGCTGCATGATTGACCAGCTGACAAATGGGCAGCTGCAGTGGGCCAGTCTGGACAACCCTTTCGATAAAGTGGTTCTGGGCCTGCCTGGGAAGAGACGGGTCTATCCCATCTACAGTGGGAAGAAGAGGTTCCCTGAGGAGCTGAAGAAGTTTTTCCCAGGGGAGGAAGAAGCCATCGATAAGTTCCTCCAGCTTGTAAAGAAAGTTGGAAAAGGTGTCTGGTTTATGGCTGTCCTGAAAATGATCCATCCACGATTGGCCAAGTTTCTCGTCTACTCTGGCCTGGTGAATTGGCTCTCTCCATTCTTTAAAATGGCACCCAGGAGCGTGACCGAAGTGGTCAATAAACTGACCAGCAACGAGGACCTCCGAGCTGTGTTCAGTTACATTTTTGGTACCTATGGAAACATTCCAAAAGAAGCCAGTTTTTCGATGCACAGCCTGCTGGTGTGTCACTATTTGGAGGGCGCATGGTATCCTAAAGGGGGCGCCAGCGAGATCGCCTACCACATGATCCCCATCATTGAGGAAGCGGGGGGCGCTGTTTTGGTTCGTGCTCCAGTCCAGCGCATTCTGATAAACGATGCCAAGCAAGCCTACGGTGTCAGTGTGATGAAAGGCCAAGAGGAAATTAATGTCTATGCACCCATCGTGATCTCCAACGCAGGACTCTTCAATACCTACCAGCAACTTCTACCTCAAGAAGTTCAAACCCTCCCAGCTATCCAGTCCCAGCTCAGCATGGTCCAGCACGGTGAGGGAGGTCTGAGTATCTTCTTGGGTCTGAATGGAACCAAGGAAGAGCTGGGCCTGAGAGCTGACAACTACTGGATCTTTCCAGAAAATAACCTTGATGAGTTGGTGGAAAACTATATGAATGCCCCAAGAGAGGAAGCTGCTAAAAATGTGCCCCTGCTTTTTGTCGCATCCCCTTCAGCCAAAGATCCCACCTGGGAAGAAAGAAATCCAGGCAAATCCACCCTTACCCTTGTAAGCTTTGCCAACTACAAGTGGTTTGAAGAATGGAAGGATGGAAAAGTCTCCAAAAGGGGAGAAGACTACAAGGAACTCAAAGAGTCATTTATCAAGTCAATTTTGGAGGTCGTTGTGGAGATCTTTCCACAGATCAAAGACAAGATTGAGTTTGTAGATGCTGGGACTCCCGTTACACATCAGTACTACATCGCGGCTCCCCGGGGCGAGATCTACGGCTGCGATCATGGCTTGGCCCGCTTCAACCCAGAGCTCAGTGTTGCCATCCGACCCGAGACGCCCATCAAAAACCTCTTCTTGACCGGGcaggatgtgtttgtgtgcggtTTTGCCGGAGCCCTGGCTGGAGCTCTCACCTGCGGTTCGGCCATCCTCAAGCGTAACTTACACTTGGACGTCATTAACATGGCCAAGGCGCGGCAGAGGGACGACCACAAGAAGGACCAATAGGAAGCAGCACGATTGCCCCTTGGGTGTACAGCTCTTAAGAAAACAAGCACCATCAAACTTAACTGTCCAATTGTCCAACCCTTTGGTGTGAATGTATGCTCTCTCTACGAGCATCTAAATCGGGCCTAGTAAGGCTTGAGCATACATTGTTGTTGTGCCTGGGGGGGCTTCACGTGTATCTGGTCTCTGTCAAGGCTGCTGTTTTTCATACAACCAGCAGGCTTCTCTGTATTGTACCAAATCTATTATCACATTGATCTGTACTACACAAGGGTAAGGAAAAAACTCTTGAAGAGCTCATTTCAAATTCCTGTTATCTGCAAACAGTTTTCAATTTAATACAaccatgtactgtattttgtaaggTACTTAAACGTATATAGACTTCtaatgtgaaacaaatattgTGCTGAGGTTTTAGGATTGCCTAGTCAATGTTACTGTAAGGATTATGCACTCTTACTGTAATGTGTTACCAAAATTATTTGATTgctctgttttaatttaaagaattaaAGTGTGCTGGATATTCCTTATAATGGGTGATgtagaaatatacattaaaaagagtGTTTGTTTCCCTGTAGTGTCTTATAATAGTACTTctgctgtatttaaataactgacaaactagttttgttttttactgaatGTACTACTACTATGCAAAAGATGCCTTACTTTCGTACTCTCAAATTTAGTACGCTTGCACATCCACTGGAATGATGACTCTTCAATAAAGGATTTCTAAAACAGacgttatttttattatatccCAGCTAACTGCTTCAGAAAACGCATTCTTCCTGATGTCTGTAAGTATGTGAACAAACTGTAAGATAAATCTTTTCAAGTGAGAAGGAACAACATGTACAACTGATGAAAGAATGATTAACTAAATTAGAAGTCTGTGCTCTTCTGAAGAGTTTTTTTAAGAGTGTCcgacttttaaatgtgttgttttaattttctaataGCAATGAAA

Function

GO: NA

KEGG:

id description
K09516 RETSAT; all-trans-retinol 13,14-reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19968 lncRNA downstream 73188 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 73188 31770675 ~ 31771274 (-) True G16069
TU19936 lncRNA downstream 124426 31718900 ~ 31720036 (-) True G16043
TU19910 lncRNA downstream 145062 31699136 ~ 31699400 (-) True G16026
TU19907 lncRNA downstream 146854 31693816 ~ 31697608 (-) True G16024
TU20077 lncRNA upstream 353604 32205723 ~ 32206877 (-) True G16154
TU20076 lncRNA upstream 354843 32206962 ~ 32208117 (-) True G16153
TU20119 lncRNA upstream 409430 32261549 ~ 32262666 (-) True AMCG00016847
TU20181 lncRNA upstream 541023 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 564072 32416191 ~ 32416444 (-) True G16245
AMCG00016834 mRNA downstream 410 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016835 mRNA downstream 26335 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016833 mRNA downstream 43210 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016831 mRNA downstream 81762 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016824 mRNA downstream 169966 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016837 mRNA upstream 127092 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016847 mRNA upstream 409809 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016846 mRNA upstream 417844 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016849 mRNA upstream 452531 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016850 mRNA upstream 530564 32382683 ~ 32383195 (-) True AMCG00016850
TU19613 other downstream 1314962 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1642111 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3058955 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4415811 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4440540 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 570939 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 645388 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 645388 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1323957 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1574369 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile