RNA id: AMCG00016846


Basic Information

Item Value
RNA id AMCG00016846
length 6288
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00016846
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32269963 ~ 32284040 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tTTAATTTGGTTACGCCATATTGGGAGTGCggaatctgcaattaaataccAATATCAAAGCGAAGGTGGCCTCGATTTATGGGAGAAATGCATGTTTTGGTGGTCTTATATATCCTGTCCGTGATGTAGTTCTGACAGGACACGGAATTGAACTCCGCTCAACACATGCACAGTTGTCGCCGCCTTTTTGGACTTAATTTGGACAACAAAACAACGCCGGGGGATCTACAGAGGCGCAGGCGACCGCAATGATACCGTTTGCTTGGTCTGCAAAATGAGGCAGCTTTAGTTGTCATGTTTTGTATACACTTCATGTCAGTGGAAGCTGTGGGGGACGTGAATTAGTGTGCGCTAGGGCTGATCTACTGAGCAGTCGcgtcttttttctttcctaagGGGGGGTACTGGCGGTGgggttattatttatattaacatccATGTAAAGATGGCGCTGGTGGGGGGAGAAGCAGATGAATCGAAAGCCTCAGACCCTAAACCGCTGTCGGCGCATGGAGGGGGAAGCGTCGGCCTGCGGAGCCGCCCGGGCTCCAGCGAGAGAGACGGCCAGGTCCGAGCTGTCAAAGCGGCGCTGCAGGAGGCGCTGGGACCCTACGAGCCCGTACTGACCTACCTGCAGTCGGTCCTGGTGTGGGAGCGACCGGTGCACAGCGTGTTCCTGTACCTGGTGGTCAACGCTGTCTTCTGGTTCTTCGCCTTGACGTCTCTGCGTCTGGTTTTCCTCCTTTCTTCCGGGTTGGCCGTGGCGGTGTGTGTCCATACCTGGAGGAACAGAATTTGGCCTGAGATCAGAGtCAAACAGTCCGATGGAGGTGACAACGAAAGCTGGGGTGTGGTACATCCTGGGCTGCTCAGTGTCCCAGAGCTCTGTCACCACGTGGCTGAAGGGTGGTTTTGTCTCCTAGTCTGCGGCCTTTTCACGTTTCTAGCAGTGCTGGGGCGCTATGTTCCAGGACTGCTGCTCTCCTATGCTGCTGTGCTGGCAGTGCTGCTGTGCCCCCTGGCAGCGTACCACAGGGTGGGGCAGAGGATTTGTGCCCGTCTGGAGCCAGCCCTGCTGAGGCTGGACTTCAGCGTCCGAGGGTACATGATGTCCAAGCAGAAGGAAAACCAATTTCTACGGAAATCACTGGGGCCCGGCCTGCTGGCAGACGGGAGCGACAGTGAGGAGGAGCTGGCCGCTTTCTGTCCCAAGCTGGATGATTCGGTGGTTGCCAGGGAGCTTGCCATCACCGACTCGGAGCACTCAGACGCTGAGGTGTCCTACACTGACAACGGCACGTTCAACCTGTCCCGGGGCCAGACCCCACTCACCGAAGGATCGGAAGGTAACGACTTTGATCGGCACAGTGACCCTGAAGAATCCTTTGCCAGGGATCTTCCTGACTTCCCCTCCATCAACCCGGAGGCCACACTGCTTGACGACGATGACGACACCAGTATTGGGATCCCCAGCCTGGGACTCCCTGGTGTGACCCGGCACTCTCTGTCCCGTGAGGACACACACCTCTACTCCGACCAGGACGACTTCGATGTGGACGTGGACCTCCCCTCCGCGAACACCTTCAGCGCAGACCTCGCAGGCCTGATCGCCAGCAACATGATCCAAGCTGCCCTCGCCGGGGCCGTCCAGCCTGCCGTCCAGCCCAGGAGAGACAGTGCCCAGAGAGCCCCCCGGGGGTACCGCAAGCAGTCCAGCTCCGAGCTCGACACTGACCTGGAAGGGGAAGATTTCGAGATGTTGGATCAGTCCGAGCTCAATCAGATGGATCCCTTCGTGTTGGCCAGCCGGTCCGGGCCacctcagcagcagcagcaggagcagcaacAGCAGGAGAGAAACTTGGGAACCAGCTTTCTATCCAACTTCCTGGGAAAGCAGcagtaaaattatttattttctgtttttccctctctttctctctcactgatTCACTCTCTTCGTGGTGTAAATGTCTAACTATCAATGTGCTGTATTCTGTGTGTGGCTGTGAaagcgtatgtgtgtgtgtgtgtgtgtgtgtgcacgcgtgcatgcgtgcgtgtgcTTGACGTGAGGTTTTTGGCGACCAAAGTCTTTGTTTTGGTTGCAGTTAATATCActgtgaagtattttaatttttattttatttgaccttATTCTTCCTCACTGCTTCCTTTCGTCTCAAGTTCAACCATGCCAATGTCCACATAAAGGATATATGTAGAATGAGCCATACAGCAGCTCATGTGTTTGTCCAAGATTTATAAAAACAAGAGCTTACCTATACCATCTCGGAAGCAGTGTGACTATGTTGGCcaaatgtgttttgcagaatacatttttgaaaaactaTATTTCCAATCTAACATGTTGGAGCAACAGTTACAATAAGCTGATCAAACCTCCAAAACAGAgagattatttaatttgcatccacattttattttgtgttttctaaagttttatacacaaaacaacacacatagTCAGTCCTAAATACTAAACCTCAGGCTAAAAAGCAAAGTTGTTTTAATCTGCACAAAAATGTTGCTGTAGCTgtctttgtacattttttgaatGTGTCTTTCTCTAAAGGGTCGTTCAGAAAAAAATCCAGAACATTTTATGATTACATAGATAACAGGTGTAACAATGTTGAACATTAATAAAGAGAATGCTGTGAACTTCAAAAGATAGGGCTCTGTAAAGTAATTTGATCTCCTAAGAAGCATGATAATAATAGGCTAAAACCAGCACATGGGTAGCTATTCCtaactgttttctttaaaaccaCAATTGAAAACTGAGAGAAAAGTCTCCCAGTGCACCATCCTTTAGCACCAGAGCGCTTCATTGTTTTCCCCCTGGGATCTCAGTTGTATGGCTCTTTCCTTTTTCTGGTACAGAATGATAAAAAATGCAGCGTTTGTCTGGGGATCCCTGCTGTGCTTCACTGTGCAACTGGGACTGTTACACAGGGACCAAACTTGACACATTCCAGTTGTGAGCGAAGATTTGTCGTTTTCCAAAAGAGCAAATGGCTTATAAACCTGGTTTGCATTGGTGTGCTATGAAACTACACGATAGGAGTGAAATCAAAATGAAGAGACtcaattttaattgaatgtctgCTTCCCAAGTACTGAATGCTTAATTCCATTACAAGAAATTCCATTTTATGAAATCACATTACATTTGAAGCATCATTGGGATGACAAACCATTACAGATAAATGCTGAAATTGATTAAGAGACTCGGAGTAGCATTACCCAGCACAGTACAAGAAAGTGACCTTTCACTTTTACTCCACACTAGTCTAACTTGTCTTTACAATTAAATGTCTTAACAGTTGAGATCAGGATAATCATATGTTTCTCTTTATATAACCCCCGACTACCATCAGGACacaaaacattcaaagcaaaccAGATGCAAGTGAGTAAGTTTGAGATGAGATTCTGCACACTCTAAGTGTAGGGTAGTGGGTCTCTCGATTTCCagttgttcatttaaaatgggGATACATATGTCTTTGCTGAGATCAGTGCAATCCCTGCATAATCAAGATGTGAGCTCCTATCAAGAGGCTAAGTTGAGACTGGCGTATTACCTCACTGAGAGAACCCACCCAAGCCACTCTGTCAATAACGCTGCCTGACTTtctcacacactgcagtcttGAGTCTATTATGGATTCTGTGGCAGTTAGaggtgtatgcgtgtgtgtgtaatgtatgtTTGGGTCTGCTCACGTGTGCTTGTCCTAGTATACACATTTGTTCTTGTGTAAGATTTCctctgtacttttttttctgtttcttgaagtaaaaacattacaaattgtgACTAGCATTACAACAAACagtcatatgtattttttaaccagGTACAATGCTTACAATGCAGAAGAAAATATGATGGGTTTTATGTCACccctttcatttttgtttttgttttagtattgtaCAGTATTATAGAATAGGACCAATAGCTATACACCGAATTGACTAGATATAGTTTGCCTTGGGATGGAGCCACACCACTCCTGTGGATTGAATGGTCTGACCTTGAGATGTCAGTAGGTGTCTGTACCAAACCCACAGCAGTTCTGCTTCCCAGCGGCGTGTTTGCTGtgttggcaaaaaaaaaaaaaaacataagatcACAAGCCATTAAAAAtgccacagagacacagactcaCCTCCAGTACAGTAAAGGAGAGGGGAGTTCAATAAAACATACCGATGACTCATTTTCACTGGCCTATAAATCGAGTAATAACCTTGCAATCTAAAGCTTGCTCTCCAGTTCGTATCTTGCATGCCTTTTCTATTGACTTACAAGAACTATGCAACCCACCTACCCCCATCTGAGCATTTGTTATGGGGGAGGGTTGTGAATTAAAGTTCAGGTCTACCTTCCATGTACAGTACCTGAAGCCTTGTCCAAGTATGGAATGCAACGAGACAGCATATATAAGAGACCGGGTTAGCCTTTATAGCCTTCCCTTGTCCCATTTTGCAGATCGcataatacagtatttacaagCAGCCTCCCAGCACTTGTAATGTTTATCTTATTTGAACCACAGCTAGCAAACAATCTATGACTTgctattttataaaaaaatatatatatataaaaggtcTTCTTTCTGTTGGTCAGTGGCATAGTAAACCCCAGTGCAGAATTATTATCTTCCAAACAGtaactgataaaataaaaaggtaaagcaTTTTGTGGTATAAAAGCATTAATATGCTCTGCTGTAAACGAGCTTCCCAGTGCTCTTTAATGCAGTTAACCAAGGCTTTTAAAGAAAGAgacgtgtttttgttttgtagaagtTTGAATATACTCCAAATTAATAGATGGAATTAACCAACATGTggccacattttattttgctttctgtgAGAGACGCGTCTTCAGACCAGAACAAGGACGTTTTAGCCGActggtgtatttgtgtgtattttgctcTCATGCAAATCTGTTTCTGACAACTGACAATCAAGCAACACCTCTGAGGCTACAGTACTTTATAAACCTATTCTGcagctttaattaaaacagaatacTGACCAGTTATGAAGCCCTTGGCGCATTCCTCAGAGCAGCTGAAGTTTTTGTATATAGATTAATAATTTCATcgacaaaaatatttaattttatgacCGATCCAGCAACCTTACTAAGAGAGATTGGCATTTATGTATTCTTTCAAATCAAGCTGATTTACTGCCAGTAGCTCCAGAGTTGTGCATAAGGGCTACAATGATGAGACCCCCTAATGTTTGTAGACATCTTGGGAGAtggtggggggttggggttcTGGAATGCTGCCATTCAATTTAAATCCAGTTTTTGGATTTGTTCCCCCCCAAAAACAGCACAAGTTTTCAAAGCATGAAACTAGGAGTAGAATTCTTCTCTCTATAAGTCTGTCATttccccattttgtttttaacgaATGTAAGTACATGACCCATGCATCCTGCACTGGTCAGATTCTTtagttaatttccttttttttcgccacttaaaaaaatatattctttcatGTTTTGCTCTTCGAGCGCACATGAGGTTGCAGTTGGGTACTGGCACACTTGGCAAGTAAACGTATAACAAGCATCACTAACCAGTCTGGACTAGGTGTAGTTAAACCATTCCTGTTTCTCTCATAGACAGATTTCCGGAAAGAGCTATGTTGGTGGATTGACGATTGGCTTCCGTTCAAACCACTTGTGTGCACTGACATCAAAATCACAGCCTACTTCCTGTGTGTATTTGAAGAATCAGGTTAAGTCATATGGTTCAATTATAGCTGGCTTAATAGCAGGGCAGGTCAGGGCAGCAACAATTGCAGGTAATTCATGACATTAATAGCGTTAGTGGTTGAGGTTTGGCATTACCTCTTGTGGGATAAACAAACTGCACTTTGCACATTTTTGCCCTCACTTAATTTTAGTGCTTGATAAAGACCTTGATAAGAAACCATGTTTACAgactgcatttttatatttcatataattatAGTGCTGTTGCTGTGAAAAGATGTattcaagcaaacaaaacaatatgctaTGTAGTGTGAAGATGTACAAAGGAAGTGTTGAAACATgaagatttttattattactattattagtagtattatatttcaataaagtttGATGTATAATGTGCAAAGAAGATATTCATTGTGTACTGGTAAGCCTCAGAATTTCCAACGGGATGGGGCAACCTGAAGACtcgtttggattttttttttcctctatctC

Function

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20119 lncRNA downstream 7297 32261549 ~ 32262666 (-) True AMCG00016847
TU20076 lncRNA downstream 61846 32206962 ~ 32208117 (-) True G16153
TU20077 lncRNA downstream 63086 32205723 ~ 32206877 (-) True G16154
TU19968 lncRNA downstream 498689 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 498689 31770675 ~ 31771274 (-) True G16069
TU20181 lncRNA upstream 109102 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 132151 32416191 ~ 32416444 (-) True G16245
TU20185 lncRNA upstream 141676 32425716 ~ 32425956 (-) True G16248
TU20186 lncRNA upstream 143812 32427852 ~ 32428080 (-) True G16249
TU20187 lncRNA upstream 150196 32434236 ~ 32436683 (-) True G16250
AMCG00016847 mRNA downstream 1995 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016837 mRNA downstream 267428 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016838 mRNA downstream 417844 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016834 mRNA downstream 425911 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016835 mRNA downstream 451836 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016849 mRNA upstream 20610 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016850 mRNA upstream 98643 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016856 mRNA upstream 154196 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 185855 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016859 mRNA upstream 218525 32502565 ~ 32507319 (-) False AMCG00016859
TU19613 other downstream 1740463 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2067612 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3484456 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4841312 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4866041 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 139018 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 213467 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 213467 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 892036 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1142448 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile