RNA id: TU20119


Basic Information

Item Value
RNA id TU20119
length 1118
lncRNA type sense_over
GC content 0.41
exon number 1
gene id AMCG00016847
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32261549 ~ 32267968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatgtaaatggaccttttttgtgtgtaacgCATCCATTAAGAGAGTGAAAAGGCACCCGTGTTTTTTTTAACGTAATGTGATTTTCAGGCAACAGATACTTCGGTGTTAGTGCATGCTCCTTTTTATGCTGGATCTCGTCACACCCACAACACACAAGATCAATCGCAAGCCTCTCTAAACAGGGCAGGGGTCTATTCATGCCCATTTAATATTGTGAGGCAGGGTCCTCAAACCAGACTCTTGATGAGCTGCTGTCCAGCTGGTCTCCTAATTTTACCCTTAATAAAGACTTGGGAGATGTTCAGTCCTGATCAATGAAGGGAGGGTTTTGGTAAatgcaatcatttattttatttatcaatgctTATTGTCTGTGCCTAGTCTGCAGAAACTCTTGGATTTCTATAAAATTAACCGAGTTGCTGACAAAAACGGATACAGGTGGTGCAAACTCCAGAGTTGAGTTTCTATaggaagtatttatttaaaggctAGATCCCTTACCTGGACAATGTCTTCCTTCATGTTGCATGTCTTCGCGGTCTGGTTAGAGCCTGTTCCTCCTAGTAGGTACTCAAGGTGAGAGAGGCTGTATACCCTGCACCAGCCAACCCCACAGAGGCCTGATGACCAAAGGCAGGGATCACCTGGGTTGAGCCCCCTTACTCCCAGCCCTACTACCATCTCCTGATTTGGTTCATCAGTAATGATGGCTGCAAACACAATGAGGAGTAGATATACACTAGATAAGAGCATTTAAGTAAAACATTGTTGCGACCTAGGAAAGATCAGTGACCCATACTTTACTCCAGCATTACGCCATTGTTGGTCCTTTTAACTTTTTGCCAAAGTCCAATTAAAATGGTTCACTATACCTTTTGGATACTATTCTGGGTATCAAATGTTTAGTGGCTTAAAGATACTTTCTTCCCAAGACAACCCGTGTTCTACTGTATGAATAAATACTAGATGGGTACACCTACACCTCgagtcttattttattattcatataaaaatatttccttCTGAAAACTAAGACTTTTTGGCTACATCAGCAAGCAAAGATTCAAAGTAATGGAACCTCTTGCTGACATCTGATGTGAGTGAACATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20076 lncRNA downstream 53432 32206962 ~ 32208117 (-) True G16153
TU20077 lncRNA downstream 54672 32205723 ~ 32206877 (-) True G16154
TU19968 lncRNA downstream 490275 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 490275 31770675 ~ 31771274 (-) True G16069
TU19936 lncRNA downstream 541513 31718900 ~ 31720036 (-) True G16043
TU20181 lncRNA upstream 130476 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 153525 32416191 ~ 32416444 (-) True G16245
TU20185 lncRNA upstream 163050 32425716 ~ 32425956 (-) True G16248
TU20186 lncRNA upstream 165186 32427852 ~ 32428080 (-) True G16249
TU20187 lncRNA upstream 171570 32434236 ~ 32436683 (-) True G16250
AMCG00016837 mRNA downstream 259014 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016838 mRNA downstream 409430 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016834 mRNA downstream 417497 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016835 mRNA downstream 443422 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016833 mRNA downstream 460297 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016846 mRNA upstream 7297 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016849 mRNA upstream 41984 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016850 mRNA upstream 120017 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016856 mRNA upstream 175570 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 207229 32469895 ~ 32470107 (-) True AMCG00016860
TU19613 other downstream 1732049 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2059198 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3476042 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4832898 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4857627 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 160392 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 234841 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 234841 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 913410 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1163822 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile