RNA id: TU20188


Basic Information

Item Value
RNA id TU20188
length 2491
RNA type TUCP
GC content 0.49
exon number 3
gene id AMCG00016859
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32497507 ~ 32507319 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTTAACCCGTTTATTGAGAGCTGAAAACAAAACGGAGAAATTTAAGAACATGATTTCTATTTGACAAAGTTTTTTGGTtgcttatttttccattttaatgaaggcaaaaaatatacatgtagaTTTAAATTTACAGaacacataaaatgtatattcctAAATATAAACAATCAGTTTCAGACCAGCTGCAAAATCCAACCCCCTGTGGGTGAGAATAGTAGTGCGTGCTCTGGTCTGTGCCTCTTGAATCAGCATTTACAAATATCCAGAGACTTCAGATAGTCCAGTTGAGAGCTGGTGATCGAAGGGTGGCTCATCTGGTCAACTCCAGTGCCTTCAGCTGGTGTCTTCAGTTACTCAACAAAGGGGCtccaattaaattattaaaagaatTACAGAATGAGCACAAGAAAATTCCTGATGAATCAACATACAAACAGAAGCAGGTCCCCATTGTTCCCAATCCCCACCAGCCCCTGATCCTCACTCAAACAGGCTGACCACTCCCACATTTCCACTCCTCTTATcccccagctctctctctgtacagatGCAGCCCCCCACAGTCCAGTgcccagctcagctcagctcagctcagttGGCTGAAGTCTTGGGTCCCCTCATTCTTGCGACCTTGGCTTCTGCGTCCAGCTCGTCCAGGATCTTCTCCTGGGACACCGAGTAGAAAGTGTAGCCATCTAAGAGCAGCAGTCAAGGCAACCTCAAGATCCACCATTGACAAATAAATACCCCCTGAGCTGTGAACCCCATGTTGTGTAGCTGCCCAGAGATCACCTGGGTTCAGCCACATCTTCCACGTCACAGGTGAAAATAGAATCAGTTCCTGAGACAGAACTGGTTGATAATCCCGCAAGTGAACTAGATTGGAGGGGATGCTTTAGTTAACTTGAAATGAAGCGTTTAGATAGAACATGTCGTCTCATAGCAATAATACTTCAGATTTAAGAGTTTACATAGCTTTCTAGAATATATCTACGTATAAAGATAAATAGACAGAATATGTATATCTGAAGCACTAATCCCAGTAACGAGATATACATTGCTAGCTGTTAGTTCACCAGAAATCTCACAGCACTAACGGAGTGTGTGCAACTAAGcagcaatatattatacatacatacatacatacatacatatatacacctcTATGTACCGTACTGGGACATGCTGCTCTTGAGAAGGATACAGATCCCCATCACCAGTGCCCCGATGGCCAGCCCCGTCGCCACATTGCGGCCGCGCAGTTTCTGGGCTTTCTTCttccactgctccagctccactTTACGGATGAACTGCATCTGCTCCGGGGTAAGAGGCTCCTTCACCGGGTCAATCCTTTTGGCGAAACTGGCCTGCGAGTCCCCTTGAGCTCCCTCGTCCGCCATCTTTACTCCGAGTGAGTAGGAGGAGACAGAGCCGACCTGTGAACTTTGAACTTCAACAGGAGAGCAGAACCAGACAACTGCGAGGCTTTCTCCGTGTTTTTGCCGATGGGCACATTGAGGGACGTCCTGAAGCGGATGGGCACGGTCCTCTCGTCCGAGCCGGGCTGCTGAAGCGGCGGCGCCTCTATTTTCAGATGCCCGTCCGGGCTCAGGGAGCAGGTGAGCGCCGCCAGGTCCGCCTGCTGGGGCAGCTCGATCTCCTGGCGGAACTCCTTGTGTCCGGCCGCCGTCGCCTCCTTGCCCGCCTCCTCCTGCTTCAGTGCGCTGACAACCAGCTTGCTCCCCACCAATTTCACCGTGATGTCTTCTATGGAAAACTCCCGGACGTCCAAGGCCAGCTCCAGCTTATTGCCGGCTTTCAGCGCGCCGTCCCTGGCAccgttgctgctgctgccgccggCGGGATTCATCAGCTGCGTTCGCCCCACAGTCGGGCTGCGCGCCGCGCCTTTTAAGAAGTCGTAAGGAAACGCGTCGCAGAAGTCCTTCATGAAGTTGTCCATCATGGCAGATCTTCTCCGCATGAAGTTCTGCTCGAAGTCCGCAAAACCCGCATTTCGGAGAGGCCACAGTATGCGAATTGTAGGCTGGTCAAAGAGGCTACCGTTGGAGAAACGGGTCTCGGTTCCCGAAGTCTGCATCAGCATGCTAGCTGTTATCAGTGAGAGGCTGCTTACTCTGTGAATATCGTCTTCTGATTAAATGCAACCAGTGACTTGTGCACTTTTATAAAGCTTCTTGGAGTACTAGAACATTCCTCAGGGACGATCTTGTTATAATGTAATCCACGAAAAGAGAAATGATTGCCCCTGCAGGGTGGTCACAGGCTAAAAGAGTGCTGCGGAAGCGCTTTTAAATGCTTCTGCTATTTACCAACTCTGCTCCTGGAGGTGTCATGTTTAATAGCTGTGGGATCAGCTTGCTATTCGTAGTCATGAGGAAATCCGAAAGATATGTTCGTGAATGTTTGGCCTTAACTGTGcaattgtaaaaaaagaaaaaagagtgTATTATTAGCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20187 lncRNA downstream 60824 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 69427 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 71551 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 81063 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 104127 32393142 ~ 32393380 (-) True G16244
TU20246 lncRNA upstream 351529 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 355989 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 481002 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 752401 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 780762 33284014 ~ 33284227 (-) True G16377
AMCG00016860 mRNA downstream 27400 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016856 mRNA downstream 27881 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016850 mRNA downstream 114312 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016849 mRNA downstream 172346 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016846 mRNA downstream 213467 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016858 mRNA upstream 5097 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016857 mRNA upstream 42367 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016862 mRNA upstream 80767 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016864 mRNA upstream 171065 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016867 mRNA upstream 359994 32863246 ~ 32871525 (-) True AMCG00016867
TU20184 other downstream 74069 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 1968007 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2295156 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3712000 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 5068856 27424893 ~ 27428651 (-) True G15076
TU20326 other upstream 672824 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 923236 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 985473 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1603438 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 5254905 37758157 ~ 37758471 (-) True G17032

Expression Profile