Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00016889 |
| length | 1302 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 11 |
| gene id | AMCG00016889 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 33391789 ~ 33434651 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0045098 | type III intermediate filament | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K05640 | GFAP; glial fibrillary acidic protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU20405 | lncRNA | downstream | 63448 | 33325086 ~ 33328341 (-) | True | G16422 |
| TU20357 | lncRNA | downstream | 99540 | 33292031 ~ 33292249 (-) | True | G16378 |
| TU20356 | lncRNA | downstream | 107562 | 33284014 ~ 33284227 (-) | True | G16377 |
| TU20354 | lncRNA | downstream | 135407 | 33255653 ~ 33256382 (-) | True | G16375 |
| TU20285 | lncRNA | downstream | 407325 | 32984254 ~ 32984464 (-) | True | G16325 |
| TU20499 | lncRNA | upstream | 193449 | 33628100 ~ 33628919 (-) | True | G16502 |
| TU20502 | lncRNA | upstream | 199476 | 33634127 ~ 33634339 (-) | True | G16505 |
| TU20506 | lncRNA | upstream | 206547 | 33641198 ~ 33641979 (-) | True | G16509 |
| TU20507 | lncRNA | upstream | 208327 | 33642978 ~ 33643661 (-) | True | G16510 |
| TU20508 | lncRNA | upstream | 209558 | 33644209 ~ 33648440 (-) | True | G16511 |
| AMCG00016887 | mRNA | downstream | 1034 | 33381884 ~ 33390755 (-) | True | AMCG00016887 |
| AMCG00016888 | mRNA | downstream | 43727 | 33333462 ~ 33348062 (-) | True | AMCG00016888 |
| AMCG00016884 | mRNA | downstream | 73207 | 33307741 ~ 33318582 (-) | True | AMCG00016884 |
| AMCG00016879 | mRNA | downstream | 196533 | 33191702 ~ 33195256 (-) | True | AMCG00016879 |
| AMCG00016877 | mRNA | downstream | 219856 | 33168630 ~ 33171933 (-) | True | AMCG00016877 |
| AMCG00016893 | mRNA | upstream | 4901 | 33439552 ~ 33473811 (-) | True | AMCG00016893 |
| AMCG00016894 | mRNA | upstream | 39359 | 33474010 ~ 33479455 (-) | True | AMCG00016894 |
| AMCG00016891 | mRNA | upstream | 54362 | 33489013 ~ 33506338 (-) | True | AMCG00016891 |
| AMCG00016895 | mRNA | upstream | 78976 | 33513627 ~ 33520074 (-) | True | AMCG00016895 |
| AMCG00016892 | mRNA | upstream | 119450 | 33554101 ~ 33575296 (-) | True | AMCG00016892 |
| TU20326 | other | downstream | 212906 | 33176076 ~ 33178883 (-) | True | G16356 |
| TU20188 | other | downstream | 888537 | 32497507 ~ 32503252 (-) | True | AMCG00016859 |
| TU20192 | other | downstream | 892894 | 32497507 ~ 32498895 (-) | False | AMCG00016859 |
| TU20184 | other | downstream | 968351 | 32423058 ~ 32423438 (-) | True | G16247 |
| TU19613 | other | downstream | 2862289 | 30526292 ~ 30529500 (-) | True | G15787 |
| TU20442 | other | upstream | 54074 | 33488725 ~ 33513579 (-) | False | AMCG00016891 |
| TU20574 | other | upstream | 672039 | 34106690 ~ 34107941 (-) | True | G16563 |
| TU21119 | other | upstream | 4323506 | 37758157 ~ 37758471 (-) | True | G17032 |
| TU21144 | other | upstream | 4592832 | 38027483 ~ 38058939 (-) | False | AMCG00016959 |
| TU21143 | other | upstream | 4620014 | 38054665 ~ 38058939 (-) | False | AMCG00016959 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00051566 | True | 2651 | mRNA | 0.46 | 9 | NC_007114.7 | 31792441 ~ 31804481 (-) |
