RNA id: TU20442


Basic Information

Item Value
RNA id TU20442
length 1995
RNA type TUCP
GC content 0.42
exon number 5
gene id AMCG00016891
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33488725 ~ 33513579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagaaagcGCAGGAAGCCGGCTGGCAGTGTGAACCGCTGGAGGAAGATACATGACAAGCGAGTGAGAAGAAAGGCAACGCGGGCATCTTGTGGACGAGCAACATTGTGTTTACAGTAACTCCCTGACCAGGATACGCAGATGGACAACAGCACAACCCCTGAAGACAAACCTGTTCAGCGCTCTAAgTCTTTCAGCCTGAAGACCCAGAAAGAGGTGTGCGCATCCTGTGAGAAGACTGTGTATCCCATGGAGCGCCTAGTGGCAGACAAAAATGTCTTCCACTCGTCCTGCTTCTGCTGCAAGCACTGCAATACCAAACTCAGCCTGGGCTCCTATGCGGCCCTGGAGGGTGAGTTCTACTGTAAGCCGCATTTCCAGCAGCTCTTCAAGAGCAAAGGCAACTACGATGAAGGCTTTGGGCGCCGGCAGCACAAGGAGCTATGGGCGACCAAGGAGCCTGAGAATCTCACCAAGACCGCATTCCTGTTTACTAAAACAGCCAATATCCAGACAACAGTTGCAGCTCTCTACCCCCACTTAACTAACAACATGAGAAAGTAGATCAGCTCACTGTTCCAGGATGCTCTGTGGTTCGTGAGGGAAGCCCTTCACTGTTACAAAGCCTGTGGACCCCTGGGTTGCTTCCCCTGCCTGCCTTGAGGAATCTTATCACTGCCTTTTTGTTCTGGAATCCTCATTGAAAATTGCAGGGAATATAATGtggggaggagaaaaaagaaaatcggTAGGATCCAAGAAATTAAAGGGGATGGGCAGGGGGAAATTAAAACTCTGCTGAATGGTATATCATTAATGATGGTATAATCCTAGTCTTTTCCAGCCtaatcatgcatttatttaagaatTCAACTTCAAAATGTCTAAGCAAAAAATTAACTTGATAGACATTAACTTCCATTGTAAAGTTCTGGTATTGCTAACTATTGTTCTATATGACACACAGTGGAATTGTTTTGGATATGAGATTTGTTTCTGTGCGGTaggctatttttaaatgacattacaGTGTGTGTGGCCACGAGAAGGGGAATATGACGTTTCGGTttcgttttttcatttttcGTTTTTTGCATGGTTGGTTTCTTTGGAGTACCTGTAGTTCAGAGTGTTGTCGTCTGTGTTTGAGAACTGTCTTTGAACTGTAAATACTTgaggagatgtttttttttgtcagtttgcAAATGCCAATACTTGTCCTTGCACAGGAACGTTTGAGGAAAAAGCAAATGttgtgggtttttattttttattttgtttttgtttttagtatgcTGTACCTAAAGGGTATTGCATGTATCTTGTAAATGCTCATTTTCTTAAGGTACGCATGGTTTTGCACTGGTaccaagacaaataaaataaataaataaattgctgtaTCTAGTTTAGGTAAAATGATATTTTAAGAGCGATGGGTAAATAAGTGTATCTTGGCGTGGGCTTCTGAGGGTCTTGTGGCCTTCTGAGGACCCTGACCTGTGGAATGATGTAGTGGCCTTAAAGCACAAGGAagttctgttttatgttttagtttagttttttgggggggtttttgtatacatttttgtattcaatattcagTTGAATTGtgtacaaaaaaattaataatgaagataatgaaagaaaaaatgtgtatgtggaACTCTCTCAtccttgtgattttttttttttgttttgtttttacacacattaaaaaaaattaaactcaaaAGTTGTTGTCGACATGGATGGATTATTTAAGTTTGTGGGGGttacatgcgtgtgtgtgagtgcatgtgcgtgtgtgtgtgttctcgtCTACCTATCTAAGTATGGACCTAGGCATTGTTACACAATCCCGAAGTGGGGTCTCCACTTGGCAAagcctttaaatcatgttaCAATACTTCACACACTCTGCCACCGAAGGCAGCTGGGAAGCTGCTCTCTGATTGCCTGGATTGAATTTTAATTCAGAACATTGTATTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20405 lncRNA downstream 160384 33325086 ~ 33328341 (-) True G16422
TU20357 lncRNA downstream 196476 33292031 ~ 33292249 (-) True G16378
TU20356 lncRNA downstream 204498 33284014 ~ 33284227 (-) True G16377
TU20354 lncRNA downstream 232343 33255653 ~ 33256382 (-) True G16375
TU20285 lncRNA downstream 504261 32984254 ~ 32984464 (-) True G16325
TU20499 lncRNA upstream 114521 33628100 ~ 33628919 (-) True G16502
TU20502 lncRNA upstream 120548 33634127 ~ 33634339 (-) True G16505
TU20506 lncRNA upstream 127619 33641198 ~ 33641979 (-) True G16509
TU20507 lncRNA upstream 129399 33642978 ~ 33643661 (-) True G16510
TU20508 lncRNA upstream 130630 33644209 ~ 33648440 (-) True G16511
AMCG00016894 mRNA downstream 9270 33474010 ~ 33479455 (-) True AMCG00016894
AMCG00016893 mRNA downstream 14914 33439552 ~ 33473811 (-) True AMCG00016893
AMCG00016889 mRNA downstream 54074 33391789 ~ 33434651 (-) True AMCG00016889
AMCG00016887 mRNA downstream 97970 33381884 ~ 33390755 (-) True AMCG00016887
AMCG00016888 mRNA downstream 140663 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016895 mRNA upstream 48 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016892 mRNA upstream 40522 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016904 mRNA upstream 69145 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016907 mRNA upstream 363524 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016908 mRNA upstream 487018 34000597 ~ 34008800 (-) True AMCG00016908
TU20415 other downstream 57640 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 309842 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 985473 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 989830 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 1065287 32423058 ~ 32423438 (-) True G16247
TU20574 other upstream 593111 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4244578 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4513904 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4541086 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7703072 41216651 ~ 41217231 (-) True G17421

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051570 True 866 mRNA 0.49 4 NC_007114.7 31850851 ~ 31875138 (-)
rainbow trout (Oncorhynchus mykiss) TU1349434 True 4160 TUCP 0.42 5 NC_048577.1 49486926 ~ 49504010 (-)