RNA id: AMCG00016932


Basic Information

Item Value
RNA id AMCG00016932
length 5018
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00016932
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35205880 ~ 35212613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCgcgctgctgtgtgtttgtgtttttttcaagaGTAGTGTATTATCCACCCCCAAGATGGCCGCTGCAGCCCCCAACCTGGACGACTCGAGCCGGACTGGTGGCGGGAGCGGCGCCGCCAGCGCCCTCGTAAGCGATGGGGACTCGGAGGAGGCCGAGGAtttcacctcctcctcccactgCTCGGAGCTGTCTCGCCGGCAGAACGAGCAGAGGAAGCTCGGTCTCTTTTGCGACGTTACGCTGGCCTTCAGCAGCGGGGCGGCGACCGGCTCAGTGCAGAGCTGCGAGTTCTCGGCTCACCGCTCGGTCCTGGCAGCCGCCACCGACTACTTCACCCCGCTCCTGGGAGGGCAGTTTTCCGAGTCGCTGTCCGGTCGGGTCGAAATGAAGGAGTGGAGCTCCGAGATGGGGCCTGACCCCGAGACGGTGGAGAGCGTCATTCAGTACATGTACACCGGGGAGATACGGGTCAGCACCTGCAATGTGCACGAAGTGCTGGAGTTGGCTGACAGGTTTCTGCTACTGCAGCTCAAGGATTTCTGTGGTGAGTTCCTGAAGAAGAAGCTGAACCTTACCAACTGCGTGGCTGTGCACAGCCTGGCCCACATGTATTCCCTGGACCAGCTGGCCCTGAAGGCAGCCGACATGATCCGCCGCAACTTCCACAAGGTCATCCAGGACGAGGAGTTCTACACATTGCCCTTCCACCTGGTCCGTGACTGGCTGTCGGACGCCGAGATCACGGTGGACGCGGAGGAGGTGCTGTTTGAGGCCATCGTCAAGTGGGTGCAGCGCATCCCAGAGGAGCGCGAGAAGTACTTTGAGGAGCTCTTCAAACTTCTACGGCTGCCCCAGGTCAAGCCCACCTATCTGACACGAGTGGTGAAGGCGGAGCGGCTGGTGGCGGCGAGCGAGGCCTGCCTGAAGCTGGTGTGCGAGGCCGTGGAGGGTCACGCCATCCGCTTTGAGAACCTCAAACCGGCCGACCTGGAGTTCTGGGCCTCTTACATGGCCGCCTTCCAGCCCCGCTTCGGCCAGAACATGGACGTGATCATGGTGGTTGGGGGTGTCTCGGAGGGGGGGGACTACCTTAGCGAGTGCGTGGGTTACTTTGTGTATGAGGACCGCTGGGTCAACCTGCCCCACATCCATAACCACCTAGATGGCCATGCCATTGCCACCACCGAATCGCACGTCTATGTAGCTGGGTCCATGGAGCCAGGCTTCGCCAAGACAGTGGAGCGCTACAACCCCAACCGCAACACCTGGGAGCAAGTAAGCAACCTCACCACCCGCAAGCACTCCTTCGGCCTCACCTGCATCAAGGACATCCTGTACAGCATTGGCGGCCACGGCAACTTCAGCCCCGGCTTTAAAGACGTCAGCGTGTACGAGCCTGAGCAGGACAAGTGGCACAACCTGGAGTCGGCTCCCAAGATCCTGCGTGACGTCAAGGCGGTCAGTGTGGAGGACCGATACGTCTACATCACTGCCCGCACTCCCGTGGACTCTGACAATGACGACGGGCTGAAGACCATCACCACGCGCTACGACACTGAGAGCCGGCAGTGGACGGACGTGGACTCGCTGCCGCTCATCGACAACTACTGCATCTTCCAGATGGCCGTGGCGCCCACCAACTTCTACCACACCGCCTCCTGTTGCCCCAAGAGCTACGAGGTGCGCGACGAGGCTGCCCGGCAGAAGATCAGTGGCCGCATTTCCGACGAGATCCTGGAGAGCCTGCCGCCGGAGGTCACCAGCATAGAGGGCGCCGCCATCTGCTACTTCGCAGATGACGTGTTTGTCATCGGTGGCTGGAAGAACAGCGATGACGTGGACAAGCAGTACCGCAAGGAGGCCTACCGCTACTGCGCTGAACGCAAGCGCTGGATGCTGCTGCCGCCCATGCCTCAGCCCCGCTGCCGCGCAACTGCCTGCCATGTACGCATCCCCTACCGCTACCTGTACGGCTGCCAGCGCTACCCCATGCCCCAGAATCTGGCCCGCCAAAGGGACCGCATGCAGCAGATGCAGCAGCTGCACCGGCGCACCCTGACTCTGCGACGCCAGTTGCAATCCCAGATTGAGTGCTGAGGTGCTTTCCCCTCGTCATCCCTTCAAAACCACGCAGTCTGATGGGTTTAcacctgcattttattttttcattttatttaatgaaccATAGAAGTCACATTTAGGTCTGTGATTGGTGTGACTGGAGAGAACAAAAGGTCAAATCTCCATGTGTGGAGAAAATGGGACATGGTGATAATGTGAATAGTCATGTACAGTGTCCAAGATCTGACTCCAGTATTTCATGCACagacagtttaaatatatattttttgtatatataccagtatatatatatataatacactttattttatttttctttactttcatgGTGTAAAAATCTTAATGTCTTGCCAGGCCGGGACTATTCTTATTAAGATCTGTTTTAAAAGATCAACAATTAGTCAAGATGATGTGTGTTTCCATTCCATTGCTTTAGGATCTACTGTGAACTGACATTCCATCTTCAAatactgtattcatatttacattccATTCCACTAGTATCACAAATTATGTTTGCAGACATCACACTTTGTGAACTTCCTTCTTCTCTCTGCAGTGATCTTCTGATTCTtacattctgtctctctctctctctctaaaatcTACAGCCTGTTGTGGGTTGGTGTGAACAGAAATGCAATTTCTTTCCACAGGCGATAGAACTCGCTTGCACTTAATATATTTGTCttatctttctatttttatgtttgtgatCCTTGAGTTATGGAAAAGCTTTGGTGAAACATCtgaagttattgtttttgtttagtttagtttgtttcttACTCCCCATTAAGATCGGCACTGCTGTTCAAGGGGAGAGAGTGTGTCATGCTCTCGGTTAGGACAGTATTTCTTGCAGGGTAATGTTGCAGACTTAAAAGGTTTCACAGATCCAGTGTTATTTTAGGAAGGGAAATCCAAGACTAAGGTTAATCTAGGTTTGTGAAACCAGCTCCtactgtaaattataatttgtaaaaacTGTTGCAGACTTGGAAACCTCAAGGGTTCTGTACATTTCAACACATTGTTTGCCCAGACTGCATATTGAAAGCTGCACCCCTATAcccaaaacatttcaaaacaaggaAAGAATCAATATAATCGTGTACTTCTAGTATCTGCATATGCCTTTCTTCTACCAAACATTCCTTACAACCATTCCTTACAGCTCCCCCCCTCCCCGTCATTTCTCAATCCCAAATGTTTTCCCatgtgttttatctttttaaattgcagacTCACTGGTGCATTGGGCAGTCTTAACAGGTGAGCTGACATTCCAGCCCCGCGTGTGGCTCCTGCTGAATCACATTCCATAGCGCATGTGGCTTCTGAAATTGCTGTTGGTGTTGTTGGACATTGCATTGCTGAGTACTGCTGCCTCTTGTTGGTTCTGTAGTGTATATGCACTCGGGTAGCAGATCCGGTGACTCTTAGATATTCAGCAGTGGCAGTGTTCCCATTTCAGGTGCTGCAGTTGACCCAAAACTGCTCCTTCTGTACTTTTATGTCCAAGGTGTTCAGTAGCAGGTGGCCCCATTACATTGCTAGTGATCTAAATGCCATTAAAGGTTGAGGAGATTAAAGCTTAATCTTGCATGACTTTTTCacgtttgtatatatatatcatgatcCTCGTGGTgggtctgtttttatttcccactGCAAGTTTTGTGGGGACATCTGCACCCCCCCAGCTGAAACTAGGGTCCAGTTGATGTAGTATTGCAGtttgctgtgaaaaaaaaataacttcacCTACAGAGTAGGCTTGGTTGCTGCATTTTATAATACCACAATAGGGACAGATCAGATTAACAGTTAATATTTCACTCTGTTGCACTGCTCCCTGCCTTTGGATTACCACCAAACATTGTCTTGTTCGCAAGTTGATCTGTGCAGAGCTGATCCACGGGATGATTTGGTTTTGCACACTTTCAGGACATCTGTTTCTGTAGCCCTGGCGATAGGCAGATCTGAGGGGAAGGTGCACTGTCCTGGTTTTCTGATTGGACCTCCTAAGATTTCGGCTGACCaatgtaacccccccccccccccccccatctatGGGTTTGTGCACCTTAGAACTAAAGTGTAAGTCGATTTTGCATATAAGCTCTTACTAAACCATCTCAGAGTCCAGTTGTGACTGCTGCACAGTCGTTTGTTCATGTATGGGATCGGCCTATTGCAGGAACTGTTTAATCTGGTGCTTCTGCACTTTTCTTGGCGTGTCTGATGAGCTGTATGTGTAAAAGACGTGCAGTGCTTCAGATGCAGGCCAGACCTAGTTTCTGATTTCATTAGGGACGAAGAAGGCAGTATTTCTGTGTGCGCATAGTCTGGTAGGGTTTGAGTAAACACTAATTTTAGCTGTCCACGCACAATAGGCTGAAAAGCCtcttctgtctttttatttttgtatcacttCTGTTCTATCTTCCAGGACTATAAGGGGTGTGAAAAAATCTCAGGTTGTCAGTATCAGTTTATGCTCTGGGCTGTTTGACATCTATCCCCCTGTCACTGAAAGCTCAATCAGTGCGGTCCAAGAAGTCATGGATAATAAATGTCTTAATCGCATGTTTTAAGGATTCTCTCCTTTTGGAAGACTGTCTTTATGTTCTCTGAAGCAGTGTTGTTGTAAACCCATAAGGACTGGTTGCTTCAAAGTCCATGTTGATGTGTTGCCAGGGCGATCTTGTGTAGTAAGCTACATTCctgttcatattttgtaagtagGACTCCTTACACAGATAAGCAAAGagctgggaaaaaaaacactaaatgtgAAACTGTATGCAGTTttggttaataataaaaactgctgTCTAAAAGATGCATATTTTTTTGCCTTGCATGTATTTTCATTGCAGAGAGGTGATGCTTGAATTGCTTCATTTGCAATAAAGaagtctttttttg

Function

GO: NA

KEGG:

id description
K10449 KLHL11; kelch-like protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20772 lncRNA upstream 1648 35201145 ~ 35204232 (+) False AMCG00016934
TU20745 lncRNA upstream 111788 35091459 ~ 35094092 (+) True G16705
TU20731 lncRNA upstream 384467 34821197 ~ 34821413 (+) True G16698
TU20725 lncRNA upstream 428833 34775825 ~ 34777047 (+) True G16692
TU20699 lncRNA upstream 469331 34736337 ~ 34736549 (+) True G16668
TU20786 lncRNA downstream 28166 35240779 ~ 35241527 (+) True G16731
TU20830 lncRNA downstream 50439 35263052 ~ 35265068 (+) True G16771
TU20835 lncRNA downstream 58020 35270633 ~ 35275819 (+) True G16775
TU20838 lncRNA downstream 66216 35278829 ~ 35279068 (+) True G16778
TU20839 lncRNA downstream 69558 35282171 ~ 35282760 (+) True G16779
AMCG00016934 mRNA upstream 1650 35158597 ~ 35204230 (+) True AMCG00016934
AMCG00016929 mRNA upstream 64091 35137549 ~ 35141789 (+) True AMCG00016929
AMCG00016930 mRNA upstream 74875 35121947 ~ 35131005 (+) True AMCG00016930
AMCG00016928 mRNA upstream 89212 35097590 ~ 35116668 (+) True AMCG00016928
AMCG00016927 mRNA upstream 124632 35033815 ~ 35081248 (+) True AMCG00016927
AMCG00016933 mRNA downstream 7949 35220562 ~ 35232529 (+) True AMCG00016933
AMCG00016935 mRNA downstream 34894 35247507 ~ 35260480 (+) True AMCG00016935
AMCG00016941 mRNA downstream 340609 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016943 mRNA downstream 410737 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016945 mRNA downstream 562463 35775076 ~ 35785159 (+) True AMCG00016945
TU20555 other upstream 1105017 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 1158160 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 1533260 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 2348440 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 2702624 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 3283438 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 7178684 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 8913601 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 9442039 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 14190106 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile