RNA id: AMCG00016945


Basic Information

Item Value
RNA id AMCG00016945
length 333
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00016945
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35775076 ~ 35785159 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtGGAGAGAATTGAGAAGCGATGTTTGGAATTGTTCGGCAGGGATTACAAGTACAGTGTGATTCAAAATACCAATGGCGAGGTCTGTGGCCACTACCCCAGACAGATTGTCTTTCTGGAGTACGAGAGCTATGAGCACGACAAAGACAGgtTTGAGAGTACAGTCAAGATTGGCAAACTGCAGGACCTAGTGAATCGCAGTAAAATGGCTCGCTGTCGGGGGAGATTTGTATGTCCAGTTATCCTCTACAATGGCAAGcACATCTGTCGATCGTCCACCCTGGCTGGCTGGGGAGAGCTATATGGACGTACTGgctataattacattttttca

Function

GO:

id name namespace
GO:0050881 musculoskeletal movement biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0046716 muscle cell cellular homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20876 lncRNA upstream 325905 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 393293 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 423156 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 468351 35306489 ~ 35306725 (+) True G16784
TU20839 lncRNA upstream 492316 35282171 ~ 35282760 (+) True G16779
TU20933 lncRNA downstream 113048 35898207 ~ 35898516 (+) True G16863
TU21047 lncRNA downstream 896180 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 1187905 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 1462269 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 1628955 37414114 ~ 37418490 (+) True G16998
AMCG00016943 mRNA upstream 151426 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016941 mRNA upstream 219880 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016935 mRNA upstream 514596 35247507 ~ 35260480 (+) True AMCG00016935
AMCG00016933 mRNA upstream 542547 35220562 ~ 35232529 (+) True AMCG00016933
AMCG00016932 mRNA upstream 562463 35205880 ~ 35212613 (+) True AMCG00016932
AMCG00016946 mRNA downstream 17989 35803148 ~ 35848748 (+) True AMCG00016946
AMCG00016948 mRNA downstream 317207 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016947 mRNA downstream 456230 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016949 mRNA downstream 514213 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016950 mRNA downstream 715890 36501049 ~ 36524631 (+) True AMCG00016950
TU20555 other upstream 1674213 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 1727356 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 2102456 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 2917636 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 3271820 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 2710892 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 6606138 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 8341055 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 8869493 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 13617560 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile