RNA id: AMCG00016947


Basic Information

Item Value
RNA id AMCG00016947
length 4824
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00016947
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36241389 ~ 36252215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACATTGCGTGTTCCTGCTACAGGGATACCAAGATGGAAATCCAGGGGCTTTTTGCAGCCCAAAACATACATCAACAACATGGCGTCTCATGTAGGACAGATCAGCTTCAGTCAAGTACAGGTACTGGTGCTCTCAAGCTTTCCAACGCAGCCGAAATCAGGGATGGCCGAGGAAAAGAACCGGAATCACACCAGAGGGAGGACAGCAGCAAACGGGCAGGGACGTCTCCATTTCGACTGCTGGCAGAAAATGGCAGCTCTTGTTTATCTAATACGAAGCAGAGCCGCCCTGTCAACAACTCGGTCCAGACATATGCGGCGATCGGGCTCCGTAACGTGAGTAATCTCTCATTATCGGGTGGTAAAGAGCAAGACAGCCGAGAAACTGGACTAAAGGGTGACTTTGAAATCGAGGAAAGCGGCCTGCATCTAGCTTTCCCCGTCTTGTTGTTAGAGGATAGCAACACACAGCTGCAGCATCCACCTCAAGTTTTACGACAACTGCAAGATGGCGCcaccctgcagcagcagcagccaccaTTGCTTTGCGAGAGCGCAGCCGCTCCAAATTCCACCACCAGAGAGAACGAAGAGTTTTACGTAGTTTTCAACATTGTTCAGGAGGGGGAGAGCAATAACTCAAAGGAAAGCGGGCGACCTTTCACTGGGACGAAAGATGAAAAGGGGAATAAGGACCCAGCGAGGGAAGTTAAGGATGCCATATTGGAACAGCAGCCTTTAATGCTACACCCAGACGACAAACTGCCAACCCCAGCAAACTCCAGGAAATCGTTCTCCCCTCTCAGCCTTTCCTGCAACAACTCCGAGGGAAGTTGTGAAGTGGAGCGTGGGACGGGAGTGACTCCGAAGCAGCGCTCATGTTTCCATTATGATTCGGGGGATATGATGGCAAACGTGAGCGACAGCCACAAAGGCGATCAATACCATTCCCCGAAGAAACACCCCAGCACCGCAGCTGATAACACAGTGGCGGATTTCTCGCAACAGTTGAACACGGTTCGTGATCTGATTTCCGAAAGCTCTTGCTTTTCGGAGGGCGTTCAGGTAAATGGCCAGGGGTGTCAGTCGTTTGGTGAAAACAGCCAGGACGGCGTTTCGGAATTCTCGGGTCAGAATGTTGTCGGAGGGAATCCATCCGGCGAGACGTTCTCGGGAACCATCATGATCAACAACCAAAGTATCATCGTTACAATAGAAAACGGGGTTTTGACACTAGCCGCACCTCCATCATCCGGCAACCACAAGGACGATGCTATTGTAAACCTGAAAGAACATCTGGGGATGAAGGATAACCAAGACATCGTGCTGATCAATTATGACAATGCGCCCAAAGCCAGTGATAAAACGGTGTGCAAAACCAACGTCTGCGGAGGGAGTTCTGCACAGTATGAAGAAACGAGATCTGGATTTTCGGTGAACGACTGCGGGTTAAATTTAAACGGCGACTGCTCGTTTTCCGATGCGAATTCCACGATGGATTCGTGTGCATCCATCAAGGACCAAGAGGACGGCACGCTGTGCTCCTTGGACGAAGCCGATATAGTTTGCCCGGACTCGAGAGACGGTCAGCTTGGCAGTTTTATTGTCTCCGAAAACGGTGAACTGCAAATGAAACTGGGCGACAGCATGGCTTTGATGGCCAAAAAAGGCGTGGTAGTCATGTACCACTGCTCGCAACTGAACTGCAGCAAAACATTCGACACTAAGCACAAGCTCAAAATACACCTGCTCTCCCACACAGAGGACCAGAGGCCTTTTAAATGTACCGTGGAAGGATGCGGGTGGTCCTTCACCACCTCGTACAAACTCAAGAGACACTTGCTATCCCATGACAAAGTGCGACCCTTCACCTGCGAGTGGGAGAACTGCGGGCGCAAGTTCACCACTGTGTACAACCTGAAAGCCCACATCAAGGCGCACGACCAGGAGAACACGTTCGTGTGTGAGATCTGCAGCGAGCGCTTCCGCACCGCCACCAAGCTCGGCAATCACCAGAGGAGTCACTTCGAGCCGGTCAGACCACACAAATGTGAATTTCCAGGTTGTGAAAAAACCTTCATTACCTTCAGTGCATTATTTTCCCATAATCGCACTCACTTCAGGGAAATCGGACAGTTCACCTGCACCTACCCCGGCTGTGACAAACGTTATGACAAAGCCTGCCGTCTCAAAATACACATGAGAAGTCACACAGGTGAAAGACCATTTGTCTGTGATTTTGAGGGATGTGGTTGGTCATTTACTAGCATGTCAAAGCTGCTGAGGCACAAAAGGAAGCATGATGATGATCGTCGATTCACCTGCAAAGAGGAGGGCTGTGGGAAATCCTTCACCAGGGCGGAGCACCTGAAGGGCCACAGCATTACACACCTGGGGACTAAGCCCTTTGAATGTCAGGTGGAAGgttGCTGTGCAAAATTCTCTGCCCGAAGTAGCCTTTACATCCATTCAAAAAAGCACCTGCAAGATGTGGAAGCATTAAAAAGCCGATGTCCAATTTCCAGCTGTAATAAGCAGTTCACCTCTAAAAGCAGCATGAAGAGCCACATGGTCAAACACCACAACTTCAGTCAAGATCTTCTCAGTCAGCTGGAGATGAGCAACTCGTTAACACCAAGCAATGAACTCACCAGCTCAGGCCAAGGAGAGCTGGGAAACATCGACATCACCTCTCTGTTCTCCAGCGTGCCAGGGAGCAACCCAAGCATCACCATGGACATGTCGCTAGTCAACTCCGGCATCTTGACCATCGATGCAGCCTCTGTGGGCGCCACCCTTGGGGGAGGCATGGCAGTCAACAGCAGCGCCCTGGCACAAGCGGTGGACCCTCTCATATTGGCAGCGGGTCCTGACATTGCTCATGGGCTGGACGGCTCTCTGGCTATGACATCCAACAGTGCAGGTCTGCCTCAGGCCACCCTGAACCTGGATGATGTGCAGACCGTCAATCCCGAGGCCCTGGGCTCCCTGACGGCCCTCTCCATTCGAACGCCTTCCCAGGATTCCATGCAGGGGCTCAGCTCCTCCAGTACCCTGGGCATCGACACGTCCACCCTTACCCCTTCCAGCAGTCTGGGGGCTGCCCCAGTCCCTGAGCTGCTCACCCCATCAAAGGTGGAGCGCAGCCTGCTGGGAGCATCAGATGTGATCGGGCAGCAGGAAGGCAGCAAGGTGGTCACGCAGTTTGTGTTCTCCAGTCCTGCTGGCTCCTACAGTGCCCAGAAAGATGTGGATCTCAGTGCCGTGTCAGGCTGCTCTTTCTTGGAGAGTGGAGGCTCAGCCCGGACAGACTATAGAGCAATCCAGCTCGCCAAGAATAAGAAGCAGCAGAAGGGGTCAGGTAGCCCAGGAGGTCCAAGCTCCAGCCAGAGGAAAAGTAAAATCGGGAAAGGAAATTCTGCTGCAgtgactgcagctccctctaGTGGGCGCTTCGGCGAGGGCGTGGTGTCACCCAATGGGCTTACAATTAGAGACCCTGCCACTGGTGCACAGTACGTTCAGATTCAGCTGTTGCAGGATGATCCTGCAGGTGATGGAGACCTGGCATTCCAGCTCAGCTCTCAGACCTCCACATCGCATACACAGCTCACTGTGGACCTGCCAGTCAACATCCTACAGGAACCGCACACATCCACTGAAGATGATGCTGGCTCAGACAATTCCCAGTTCACAGGAAGCACAATAAATCTGCAAGATCTTGAATAATAACAGGAATCAAAGTGCTCAATTATGTAGTCAAATACATACGTAATTGGAATAGTGCAAATACAGGAACTAGGGTGGCAGCATTTATACTTGGAATGAGAAATGCAACAAAGCTATAATTATTGTCACATGCTGGTGTACACTGGTGGATTTGGAAAAcgtattttgttaaatatatcatttaaatgttctttgagattttcattctttattatgTCCAAAACACAATTTCGTACTACTTAATATTTCTGTATACTTTTGTAAGGATatgttacaaaaatgtaaagactagtgttacacattattgtgtatgttatttttaaaagccaatCTGCGTTTTTATATTTGCAGACATTGCGCATTataatacaagaaaatgcaaaaattatCAAAATTCTTTGATATACAGTAATGTATACACACCATGCATctatcaacaaggcattttgcCTCACAACAAGAAAGTGTCAATTTGTCAATGCCTGTACCTTACAAATATCAAGcccatattttgttttgtgtttgagaATTTATTTGgaatgttatttaatatttgaaagttTATTATActattcagtttaaaataagGACATTTCCATGTatatatcaaatgttttaaactttCCTTAGTGAATCGCgctattttgatattttttgtagCTATCTTTGTTGTTCTGAGACAGAGGTTTATCAAAgcttaatgttttattagttCAATTTGAAGGAATTGgctgcattttgtttccacTGCATGTGATCTGTGTTCTCAGAGTTGACACCTGAAATAGTGTCAGGATATTTATTGGGTTTCTTGCATAACAGCTTACTTGCACATACTGTTTACAGCAGGAACAAGCAATTATGCCTTACAGAAATAAGAGAATTAAAGCAACTCCTtgtggaaagttttttttttttgtaaggttttttttttttttttttacatttattgaaTATTATCGTTGTCTGAGATTAAATATGGTCCTCCTTGATCAGATATGTCATGCCAATAGGAAAAACtcttcatatatataatgtgtttaatcttgtacatgttatttatttgttttgtaaaaaaaataataaaaatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20933 lncRNA upstream 342873 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 792218 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 859606 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 889469 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 934664 35306489 ~ 35306725 (+) True G16784
TU21047 lncRNA downstream 429124 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 720849 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 995213 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 1161899 37414114 ~ 37418490 (+) True G16998
TU21083 lncRNA downstream 1161899 37414114 ~ 37414819 (+) False G16998
AMCG00016948 mRNA upstream 39187 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016946 mRNA upstream 392641 35803148 ~ 35848748 (+) True AMCG00016946
AMCG00016945 mRNA upstream 456230 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016943 mRNA upstream 617739 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016941 mRNA upstream 686193 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016949 mRNA downstream 47157 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016950 mRNA downstream 248834 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016951 mRNA downstream 281721 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016960 mRNA downstream 1833075 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 2069750 38321965 ~ 38336646 (+) True AMCG00016966
TU20555 other upstream 2140526 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 2193669 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 2568769 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 3383949 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 3738133 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 2243836 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 6139082 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 7873999 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 8402437 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 13150504 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile