RNA id: AMCG00016949


Basic Information

Item Value
RNA id AMCG00016949
length 903
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00016949
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36299372 ~ 36301893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGATCACTTGTTACTAACCGAGGAGACATTTTCCCACTCTGGGTCTCCGGTGGGCTACCTCGGTGACATGGTGACTGATGCTGGCACCTACCAGATCTTGCCATCTCCCTTCTCTGAGGATGAGCTTAGTGACTCTTCCAGTTTCCGCTCTTGCTCCAGTCCGGATTCTCAGGTTCTAAGCTCCAGTTATGGGAGCAGTTCGAGTGTGGAGAGTCAGGACAGCTTCATAGACTACCTTTTGGCCCAGaccaccttgggcagtgctcCTGGCTTCATGTGGGACAGGAAAGACCTCAGAGGTTCTGTGGTGAAGGAGGAGGTTTTCGAGTTTCCCGTATTCTCAGCCGATGTGAAGGACACGGAGGTATTCCATCCCACCTTGGAGGAGATTGAGGAGTTCCTGGAGGAGAACATGGAGGTGGCTCTGATAGAAGAGCCTAAGGAGGAGTCCAAAGGGGCCAGAGGGGGCCAGCAGATGTCAACAGGAGGCGAGCACAAAGACCAAACTGTGCCCAATGTGGCAGTCAGCGAAACCAAAACCCTACTGTCCCCTGAATCTGTTAAAAAAGAGGAGGTTGGGGGGAAACCTGTGTCCGTGGATGGTGGGGTTCCCGTAATTCTGCAGATCCAGCCGATCCAAATCAAGCAGGAACAAAACTCTGCCAGTGTGACtagccagcagcagcagccacaaACGCCACCGGCACCGCAGCCACCACAGTCGGACATTAAAATTGCCCAGCTTCTCGTCAACATCCAGGGCCAAACTTTCGCCCTGGTGCCTCAGCTGGTGCAGTCAGCCAACTTCAACGCTTCCTCCAAGTTTGTTCGCATCGCCCCCGTCCCCATCGCGGCCAAACCCATGGGTGTGGGTGATGCAAGCCAGGgaaTTCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20933 lncRNA upstream 400856 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 850201 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 917589 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 947452 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 992647 35306489 ~ 35306725 (+) True G16784
TU21047 lncRNA downstream 379446 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 671171 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 945535 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 1112221 37414114 ~ 37418490 (+) True G16998
TU21083 lncRNA downstream 1112221 37414114 ~ 37414819 (+) False G16998
AMCG00016947 mRNA upstream 47157 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 97170 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016946 mRNA upstream 450624 35803148 ~ 35848748 (+) True AMCG00016946
AMCG00016945 mRNA upstream 514213 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016943 mRNA upstream 675722 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016950 mRNA downstream 199156 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016951 mRNA downstream 232043 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016960 mRNA downstream 1783397 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 2020072 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 2035752 38337645 ~ 38351463 (+) True AMCG00016965
TU20555 other upstream 2198509 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 2251652 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 2626752 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 3441932 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 3796116 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 2194158 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 6089404 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 7824321 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 8352759 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 13100826 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU235534 True 986 lncRNA 0.40 2 NC_048566.1 95717482 ~ 95718864 (-)
tiger barb (Puntius tetrazona) TU235534 True 7297 TUCP 0.41 2 NC_056721.1 18747391 ~ 18754712 (-)