RNA id: AMCG00016950


Basic Information

Item Value
RNA id AMCG00016950
length 3362
RNA type mRNA
GC content 0.44
exon number 21
gene id AMCG00016950
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36501049 ~ 36524631 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCACTCCGGATTACATCTGTGCAGTATACTGCAGTGTTCAATCACTACACCTGACAAAGGCAGATCGGGTACCTTTCAAAAAAGCTCCAAGTGGTGTGTCACAAGTTAAGCAGACATGAAGATTGCTGTAATTGGACAGAGCCTGTTTGGGCAGGAGGTTTATAAGGAGCTGGTGAAGGAAGGGCACCAGATTGTAGGTGTTTTTACAATCCCAGACAAGGATGGAAAAGCAGATCCTTTGGCCATGGAGGCGGAGAAGGATGGTGTGCCCGTGTTTAAATTCCCACGCTGGAGATTGAAGGGGAAGGGTATTCCAGAGGTGGTGATGCAGTATAAAGCAGTGGGAGCAGAACTCAATGTGATGCCCTTCTGCTCACAGTTCATTCCCATGGAGGTCATTGACTTCCCCAAGCATGGCTCCATCATTTACCACCCCTCCTTACTGCCACGCCACAGGGGCGCTTCGGCCATCAACTGGACCTTGATCCACGGGGATAAAAAAGGTGGTTTCACAGTGTTTTGGGCAGATGATGGTCTGGACACGGGGCCAATCCTCCTGCAGAGAGAGTGTGATGTTGAACCAGATGACACAGTAAACACCATCTACAATAGGTTCCTTTTCCCAGAGGGGGTTAAAGGCACAGTGGAGGCAGTGAGGCTGATAGCAGAGGGAAAAGCCCCAAAGATAACCCAGACAGAAGAGGGAGCAACATATGAGGGAATCCAAAAAAAGGACAATGCAAAGATTAGCTGGGACCAGCCTGCTGAAGCCATTCACAATTGGATCAGAGGGAATGACAAAGTACCTGGAGCTTGGGCAGAAGTAGATGGACAGAGAGTAACCTTTTACGGTTCTTCACTGGCAGAGAATGCCTCCTCTTTGGATGGGCAGCCTCTGGATATCCCAGGAGCCAGCAGGCCAGGAAAGGTCACCAAAAACGGGCTGGTCCTGTTTGGCAACGATGGCAAGACGTATTTCCACTCTGGTGACAGCAGCACCGTGGAACTAACAGAGGAGGAAAAGAGCTTTGCTGAGGAGATACGGGGTGTCTGGAAAGGCATATTGACAAATGTAGCTGACATTCAGGATTCAACTGACTTTTTCAAGTCTGGAGCAGCATCTATGGATGTTGTCCAGAACGAGGATGTGTACATGGCCTCCACCTTCCAGGAATTCATACAGATGCTGGTGCGCAAGCTGCGAGGCGAGGACGGCGAGGAGGAAATCGTAGTTGATTATgGCATCTGTAATGTATCCCTGGCCCAGGTCTCTGATGTGGACAAAGCTGTTGCAGCAGCTAAAGAGGCATTTGAGAATGGAGAGTGGGGGCGAATGAACCCCCGTGATAGAGGAAGGCTGATTTACAGACTGGCTGACCTCATGGAGGAACACCAGGAAGAGCTGGCCACTATCGAGGCCATTGACTCAGGCGCTGTCTACACTCTGGCCCTGAAGACCCATGTTGGAATGTCCATCCAGACATTCAGATACTTTGCAGGCTGGTGTGACAAGATACAGGGCTGCACCATCCCCATCAATCAAGCTCGACCTAATCGAAACCTGACTTTCACGAAAAGAGTGCCAATAGGAGTGTGTGGAATCGTTATTCCCTGGAATTACCCCCTTATGATGCTGGCCTGGAAGACCGCAGCATGTTTAGCTGCTGGTAACACTGTTGTTCTCAAACCAGCCCAGGTAACTCCCCTTACCGCTGTCAAATTTGCAGAGCTCACCGCCAAGGCAGGTTTTCCTAAGGGAGTGGTCAACATTCTGCCAGGAGCAGTGAGTAATGTGAAAAAGGTTTCCCTGGAACTAGGGGGTAAATCCCCTCTCATTATCTTCAGTGACTGTGACATGGACAAAGCAGTGCGCATGGGAATGAGCTCTGTGTTCTTCAACAAAGGGGAAAACTGCATAGCAGCTGGGAGACTGTTTGTAGAGGAGGTGAAAAAGATGAAGATCGGAGACCCATTGGACAGGTCCACTGACCATGGACCTCAAAATCACAGAGCCCACCTGGACAAACTAGTCCAGTACAGCGACACAGGTGTGAAGGAAGGAGCTACACTGGTTCATGGAGGGAAGCAGCTTGATCGACCAGGTTTCTTCTTTCAGCCCACAATTTTTACTAATGTGGAGGACCACATGTACATTGCTAAAGAGGAGTCCTTTGGCCCCATTATGATTATCTCCAAATTCAAGGATGGTGATGTTGATGGTGTTCTGAAACGGGCCAATGACACAGAGTTTGGCCTGGCCTCTGGGGTGTTCACCAAGGACATCAACAAGGCCTTGTACGTCAGCGACAAACTGCAGGCCGGCACAGTTTTTGTCAATACCTACAACAAAACTGATGTGGCGTCCCCTTTTGGAGGATTCAAGCAGTCTGGCTTTGGTAAAGACCTAGGTGAAGAGGCTCTGAATGAATACCTGAAGACAAAAGCAGTGACTATTGAATATTAACAGTAGTGGACAactatcattttgtatttggttttattataattaatttatagtaaaaataacaatacaaatcctAGTCCTTAACCTTGTTTTTACAGCATTAGAAACTCACAGTGGCTTTCTTTCCCCATActattgttttgtataaaagcttttttggaaatccaatgttatttttttcccataaaAATCAGTACAAGAGCTATAAACAATTTCACAATACATAAATCTGTGTAATAAATCTAAACATGCATTTCATCTCTTGAGAAGCACTATTATTTGTTTGTCCCAAATGACTTTATTGACCACTTTATTGTTCAATAGGGTTTTTactcacatttgcatttcaaaagatATAGATAAatccaatgtttgttttataatttttgaGAACAGAGGTTGATACATTGTATTGCAGCCTGTGTAATAGAATATCTGATTGCTTATtgctgtaatttgtaattttagaagttatattaacatttaatttgctccaATAACCATTTAATTGCTTTATGTTGTGCCCCACCTCAGCATTTGGTTATGAAGTCGCAAATCAcataattttgttgttttgattttgtcttttaaaacataaacttTAATTGTCTGACTATGCTTCTTTAATAGACTATGAAAATGTATAGTAAAAAATGTTTGAAGCCTATTTGTCATCAGTTAGACATTGTATAAGTATGTCATTGTAAAATGTCCTCTTCTGACAACTTCTGGATAACAGTACTCGGCATACATGTAACTTAATGCTGATGTGTACCACTGACATTATGTTTTGAGATTGAAagcaatgtaatacaatatttttacttatttttgcatttttactgGAAAGTCAGCTTTTAAtaacctaaaaataaacaagtccAAAATTGCTAACA

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20933 lncRNA upstream 602533 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 1051878 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 1119266 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 1149129 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 1194324 35306489 ~ 35306725 (+) True G16784
TU21047 lncRNA downstream 156708 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 448433 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 722797 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 889483 37414114 ~ 37418490 (+) True G16998
TU21083 lncRNA downstream 889483 37414114 ~ 37414819 (+) False G16998
AMCG00016949 mRNA upstream 199156 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 248834 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 298847 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016946 mRNA upstream 652301 35803148 ~ 35848748 (+) True AMCG00016946
AMCG00016945 mRNA upstream 715890 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016951 mRNA downstream 9305 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016960 mRNA downstream 1560659 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 1797334 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 1813014 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 1871068 38395699 ~ 38399287 (+) True AMCG00016970
TU20555 other upstream 2400186 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 2453329 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 2828429 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 3643609 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 3997793 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 1971420 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 5866666 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 7601583 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 8130021 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 12878088 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile