RNA id: TU21143


Basic Information

Item Value
RNA id TU21143
length 543
RNA type TUCP
GC content 0.56
exon number 4
gene id AMCG00016959
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37875250 ~ 38058939 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCATCTGGAGTGCAGAGTCGAGCACTAGATAGCTAACAATTGGTCACAGAAAAGGACAATACTGAAGTAAACGGGTCTCCTGTTCAAGAGTGTGAGCGACAGTGGTCTAGGGGCTGTGCTTTAGGCCTGGAACTGCAATGGGGGGCAGCGAGAGCACGACCAGGAAGGTGTCTTTTGGCATGGACGAGGAGGACAGGGTCAGGGTTTTGCATGGAATCAAGCTGTCGGAGGATGTCGTGAGACGAATGCAGGAACCCTCTTCTGACCCCAAGCCTTCAGCGCCAGAGAGCCCGTCCTCTCCCGCAGGCAGTGGACAACCGGGATCTCCAGGTTCAAAGACAAATTCAGGACACACTTTCACAGGGAAGGAGGAAGAACTGTACAGAAGGTATGAACGAGAAAAGGCACTGGTCCAGGAGGAGCTGGCCCGGATTGCGCAGAAGGAGAGGGAGTCGGCGAGAGACGAGCTGAGTCTGGCTGTGCTGCGCGAGAGGGCGCACTCCCGCGAGGAGGCTGAGAGAGCCAAGACCCTGGTGAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21147 lncRNA downstream 86497 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 196141 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 238648 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 639855 37414114 ~ 37414810 (-) True G17021
TU21075 lncRNA downstream 798874 37241759 ~ 37255791 (-) False G16992
TU21193 lncRNA upstream 30740 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 266311 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 280636 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 281444 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 326882 38385821 ~ 38386161 (-) True G17164
AMCG00016956 mRNA downstream 366430 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016957 mRNA downstream 485160 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016955 mRNA downstream 555504 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016954 mRNA downstream 1352683 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 1484654 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016958 mRNA upstream 3134 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016964 mRNA upstream 33110 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016963 mRNA upstream 82822 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016962 mRNA upstream 90566 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016961 mRNA upstream 112213 38171152 ~ 38174324 (-) True AMCG00016961
TU21119 other downstream 296194 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 3946724 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4541086 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 4623580 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4875782 33176076 ~ 33178883 (-) True G16356
TU21619 other upstream 3157712 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4749772 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10430188 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13371916 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13386648 51445587 ~ 51449786 (-) True G19335

Expression Profile