RNA id: AMCG00016961


Basic Information

Item Value
RNA id AMCG00016961
length 714
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016961
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38171152 ~ 38174324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTTCTACATCAGCTCCTTATCTAGAACAGACATCCGCTGTGTGAAGCCCCCGTCCGCCGCACAGCAGCCCCGCCGCTACCAAACTGCACCCAACTATAACTACAAGTGGACGGATATCCATTATGAGGCCAGCCGGGGAAATGTGGAGAAATTGCGAGTGCTTCTTCTAACATCAGGTAAAGACCAGATTGACCAGAAGGACTATTATGGGAAGACCCCTCTTTACTGGGCTGCCTACAAAGGCCAGAAGTCTTCCATGGAACTGCTGCTGAAACATGGGGCCAATGTCAACAGTCAATGCAAGCATGGAGGGACTCCACTGCATGCAGCTCATGGTGCAGATGTTGATCTCCCTGATATATGGGGTGTGACTCCTATGTACTTGGCTGCATGTAGTGGGCAGATAGAATGCATCCAGATCCTGGTCCAAGCCGGAGCGAAGATCACATACAAGAACAAGAAAACTGGGGAGGCTCCTAAACAGCTCGCCTCCAAAATGGCTCTCATCACATGGATTGAGAGCTACCAGAAAGAGCCCCGCTCCCTGAAGCACAGCTGCCGTAGGACGATACGAGAGGCTCTGGGGCCTAGCCGGATCACAGCCCTCCACTCCTTTGACATCCCGCTGTGCCTCAAAAACTACTTGATGTATGAGGACCTACAGCTGCAAGAACAATCTCAAGCAGGAGTTCAGAAGAGTTTAAATGGA

Function

GO:

id name namespace
GO:0050803 regulation of synapse structure or activity biological_process

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21193 lncRNA downstream 53897 38089679 ~ 38117255 (-) True G17094
TU21147 lncRNA downstream 202984 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 312628 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 355135 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 756342 37414114 ~ 37414810 (-) True G17021
TU21253 lncRNA upstream 150926 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 165251 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 166059 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 211497 38385821 ~ 38386161 (-) True G17164
TU21283 lncRNA upstream 217346 38391670 ~ 38392072 (-) True G17166
AMCG00016962 mRNA downstream 7492 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016963 mRNA downstream 25019 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016964 mRNA downstream 56406 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016958 mRNA downstream 99209 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016959 mRNA downstream 112352 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016967 mRNA upstream 7978 38182302 ~ 38219837 (-) True AMCG00016967
AMCG00016968 mRNA upstream 186210 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016969 mRNA upstream 331832 38506156 ~ 38513767 (-) True AMCG00016969
AMCG00016977 mRNA upstream 647784 38822108 ~ 38893519 (-) True AMCG00016977
AMCG00016978 mRNA upstream 1044500 39218824 ~ 39237899 (-) True AMCG00016978
TU21144 other downstream 112213 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 112213 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 412681 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 4063211 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4657573 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 3042327 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4634387 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10314803 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13256531 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13271263 51445587 ~ 51449786 (-) True G19335

Expression Profile