RNA id: AMCG00016962


Basic Information

Item Value
RNA id AMCG00016962
length 3175
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00016962
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38149505 ~ 38163660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAAGCAGGGGCCTGCCCCCTTTTCCCTTCTCTGTCAGCCCCAAATGAGGGTCCCTTTGCCAAGGCAGTGTGGAGAGCACTGCCAGGGGTCCACAGCAGAGGGATAAAGCAAGGAAGCAACATGCAGTGTCTTCAGCCTCCAGCCCAGGCACATTTGAAATTGTCCCCAAAATCGAACCTTGCTCCTTCATCAGAATCCCTGCTGAGAGATCCACATGCCTGGGATGACATTGAGAGGCTGCTGGCCACGGGTGGAGATGACAACCTGACACAAGAGGACTCAAGGGAATACTGTTACGGGGGATACCATCCAGTGAAGATAGGAGATACTTTCAACAGACGATACCAAGTGCACAGAAAGCTGGGATGGGGTTACTTCTCCACTGTCTGGCTTTGCAATGATCTACATAAGAAGCGCCTTGTAGCTGTCAAGGTGTCAAAGAGTGGAGCTGGCTTCACACAAGCAGCACAGGATGAGTTGGCGTTGTTGCGATGTGCTTGGGGATCCAACAAAAAGCATCTTTACAGCCGGCACATTGTGGAACTGCTGGACGAATTTAAACTGGTGGGGGAGAATGGGATCCACATGTGCTTGGTGTTGGAGTTTCTGGGGAGGGATCTCCACAGTTACATGCTCAGCTGTGGCACTCCTGGGCTTCCACTCTCTTTGGTTCTCCAAGGGCTGGCTTATCTTCACAATCAGTGTCAGATCATCCATACTGACATCAAGCCAGAAAATATACTGCTGAAGGTTGGGGAGTACTGCCTGAAACAGACAGAAGGGGGAGCTGTCAATTTCCAGCCAGGAGGAGACCAGACAATAGGCCACACAGATGTGGATCATTGTGGTAATCTACTGATTAACCCTGTGCAGTCTGCGACAACCGAGGACATAAAAGTGAAAATTGCAGATCTTGGAAGTTCCTGCTGGGTGTATAAGCACTTTTCTGATGAGATCCAGACTCGACAGTATCGATCTCTAGAAGTGCTGATTGGTTCTGAATATGGTCCTCCGGCAGATATTTGGAGCACAGCGTGCATGGCTTTTGAGCTGGCAACTGGAGATTCCTTGTTCGAACCAAAAGCTGGGAAGTCATACTCAGTGGAGGAAGATCACCTCGCTCACATCATTGAGCTTCTGGGAAAAATCCCAGCAAAACTTGTTCTTTCGGGCAAATACTCAAGagaatattttaacaataaagGGGACCTCCGACGAATTCGAGGGTTACGGCCCTGGAGTCTGTATGAGGTCCTGGTGGAGAAATATCACTGGGGGCTGATGCAGGCCACACTCTTTGCTGACTTCCTGCTCCGGATGTTGATGTTCACCCCCGAGCGCAGGGCCACAGCTGACCAGTGTCTCACGCACCCCTGGCTTACCTCCTGAAAATCTCTCAAACTGTGCCTGCCCCAGAAACTTGCTGATGCCAATACCTTTCAGATTGTATTCACACCCCACTTCATCAAGGGGAGGCCTTCTAAATGATCACACGCTCTTTCGATTCAGTACTTGAAATGCATCTCACTTGTGTTTGAGCCCATGCCTGCCTAGCCCACCCAAAGCCTGAAACTTGTGTTCTTGACAGCCTGGATTGCTGATTAGTTGGCGTGCTACAAAAAGAGTGTGAAGGATGGAAGCTTATAACATGAAACTCTGAAGCACATTCATTATGAGAAAGTGAGAAATGTATTTAGCCTAATGCCTACATGTGTCAGGTTTGTATATTAATCAAGAAATGATTATCAGATAGCAATGACATTTGTCTTTGTGCAGAGGCTTACATTCACTTAATCTGctgaatattattaatttattccagCTTCGTGGTTACCTTAAGAACCATGGACGGTCTCAGCTCTCCTGATATTACGAAATCATGTTACCAAATATGCTAGAACGGTGATACAacagataatacaaatatggGTGGAGATGTATGGAGGTGGGCTGGACTTGTGCATGCTATGCCAACAGCAAAGGAAATGCAACAGGATTTTTCCACAATGGGCAGGTAGGATACAAGTGAAGATGGATGTGTAAATTAATGCTACAGTGTTACAGGCAAGTGATGATAAAGTATTGTATAATTGGAGGTGCCTTATAAAGATTATAaggcaaacaattaaaaagaaacattgacCACTCATGCTTTTATATAgacaatgtgcaataaaatgCCTCAAGTGTGGCTCACTGTACAGGTGGTGTTTTCTGGTAGGGGTATAGAATGTCACTGACTGTGGTGACtgacatttaaaactgaagagCAGCTGCAGCTTTTAATTTGGCATCGTGTGGGAACAAATAAGGGGAAATGATTCACCTGGAGAGAGAGTgaagcaagagagagggagagagactgacaAAATCTTGAGTATGTGATTGTGTGAAGAATTCCTCTCCTCTTTCCTGCCAAGTAAATCAGTTTCCCACCTTTTCCTCACAGATCGCTGATAAACCTATACAAACTGTTTCAGCTGTTCTACAGTTTGAAGTGGCTGTCCCCTCGAATCAGTGTAATTCTTTACTTTTCACAGAAAACATAATTCCAGTAGttgaataatcaataataattaccAATTCCAAAATAGAGTGCAAAATAACATGATCAAATAGAGGTGCTGttaccaaatgtatttttgtgactAATTGATGTGGTTACTCAGGAACCCAAAGAGTAGACTTGTTAGCAGCAGAATACCCACAGGCAGTCGTAACCGGTGCtacatataatattttaacatacaaCAACTGTTAATGGGTGTCTTACAGAATTACAAGTCGTTCTGCAATCCTATCTGTTCCTGGTCTCAACGTTATGTTGCATTTCACTCTTGAGAAACACTAAACTGGGTTGCATATTTCCAAATCAGACTGTAAATAGTGTGGTTGGTGCTGTTTTTATACTGGATTGCTGTTGTTTAATCCTGAGCATGAATCCCTGGAATAGTTCTTGCAAGGAATACTGTATACCAACTTCctttttttctatcttttttttgttttgtatcctaTTCTTTGTGTCCTCCCTGACTCTGTCATTTGCTATACAATAAAGTGTCTACTGGTTTCAGTTTTGCCCTGTTTAATGAAGGCATTCTGAATCACAtctttgtgtgcatgtttaaatATCTACAGTATACTGcatctaaaaatgtaaaatatgttta

Function

GO: NA

KEGG:

id description
K08832 SRPK3, STK23; serine/threonine-protein kinase SRPK3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21193 lncRNA downstream 32250 38089679 ~ 38117255 (-) True G17094
TU21147 lncRNA downstream 181337 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 290981 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 333488 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 734695 37414114 ~ 37414810 (-) True G17021
TU21253 lncRNA upstream 161590 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 175915 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 176723 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 222161 38385821 ~ 38386161 (-) True G17164
TU21283 lncRNA upstream 228010 38391670 ~ 38392072 (-) True G17166
AMCG00016963 mRNA downstream 3372 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016964 mRNA downstream 34759 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016958 mRNA downstream 77562 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016959 mRNA downstream 90705 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016956 mRNA downstream 461270 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016961 mRNA upstream 7492 38171152 ~ 38174324 (-) True AMCG00016961
AMCG00016967 mRNA upstream 18642 38182302 ~ 38219837 (-) True AMCG00016967
AMCG00016968 mRNA upstream 196874 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016969 mRNA upstream 342496 38506156 ~ 38513767 (-) True AMCG00016969
AMCG00016977 mRNA upstream 658448 38822108 ~ 38893519 (-) True AMCG00016977
TU21144 other downstream 90566 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 90566 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 391034 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 4041564 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4635926 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 3052991 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4645051 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10325467 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13267195 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13281927 51445587 ~ 51449786 (-) True G19335

Expression Profile