RNA id: AMCG00016965


Basic Information

Item Value
RNA id AMCG00016965
length 2358
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00016965
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38337645 ~ 38351463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAGTGAAAGCCATTTCCTAGTCCGATTCAAAGAAATGTTCCGTCAGATCAGCTTGGGATTACCAGTTATCCTTATCCTGCTGGGTATGAAGGGGACAACAATGCTTTTCTCTGAAGGTCTCCTCCAGGCTCCCAGTCTGGAAATTGTCAGCCATTCAGGTGACAATAACATCAAGCTGTTTTATGATGTGGATTTTACTTGTACCCTCCCAACTGGCACAGAGCTGCCAGTCTCAGTGTACCTGGGCAAGAAAGCCAGTCCTCCTCTAGTGCTCACGATGACCACAGCAACATCTCGTATCCAAAACGACTTCACTCTGAAGGCTGTCAAGGAGAATGAAGGCCTTCTCAGCTGCTGGTACATCATCACCAGAAACAATGTATCTTCTGAGCTCAGCCTGCCAGTCAATGTAACCATCAGCAGGAACTTCACCATCACATGCGCTGTACCTGATGAGTATGCCAATTCTACTCTGAATGTGTATCACAGCTATGATGCCAGAACAGGCAAAACCATTACCACTCTGGTTGGCTCAGTGTTCCTTGAGAACAAGTTCAACTCGATTGTATACAGAAAGGATGAGGCTGATACCAGCGACTCTGGGGAGTATACGTGCAGAATGGCAATAAACTACTATAATCACAATTTGATGTCACCGAAGTCAGACCCTATTGATGTGAATGTGGAGACTTTCCCAGTGCGGCTCCGACTTGGTTTGTCGTACTATTACCAGACCTGTGCTGGAAGACTGGAGGTGTTTGTGAGGCACTCTTGGGGCACTGTCTGTGAAAACTCAGACTGGTTATTGGGACGATCCACTGCAGATGTTGTCTGCAAACAGCTGGGCTGTGGTCAGGCTGCATACCTCCTGTCTGCACGAAACAGTTCGATTGCAGGGAACGGCCCCATCGCTCTGGGACAGGTGAACTGCAGTGGCAGTGAGAGATACCTCCGAGAGTGCAATATTGGAGCCGTACAGCCCTCTTGCTCTCACTCGCAAGATGTGGGTGTCATCTGTACAGGTTTCCCGCCTGCACCAGAAATATTCCAGTCTGGTTATAGCTTTCAACAAAGTGGATTAATTCAAAGAAGTTCAGTTAAAATTGAATGTACATTGAGAGCAAGTTTGCTGGAAAGTACTGAGGTCCTCCTCGCACTTCAGGTGGCCTCCTCTTCATCCAAAATCATTAGTAAGACGACCAGGTTGGGAGAGACGGTTTCTTTCCTGTTGGAGGACTACACTGGACCTAAAGATTTAGTTTGTGCTGCTCGGCTGGAGGTCTTTGGGGAAATATTCAGCTCCACATCTAAGAAACTGAGCATCACCGTTCCTAGTACAGAGATTACCACAAAAATTACAACAGTGAAGTATGTGGGAGTGATTGCTGTAATCATCGTGATCGTCATTGCAGTTTTGATTTCTGGCCTTCTGTATTGTTGCTACCGGGCTAAAAAAAAGAACACGCAGACAATCACAAATACCACGGGACAAATGAACACTGcatttcagcaAACTACAGAATGCTGAAACATCATGAAAAGAGTGGAAAATAACAATCAATGTTTTCTAGGATTCAATCATTGAAGAACAAAGGTTTATGGatgatgttttgtattaatcCATATCTATCACTATTGTTCTTTTGTCCATGCAGATACTGTTCCTGTAAATCTGTATGCACTTATGCTTTGAAGCAATAATGCAATTACTGATATTccttgttatttgtttttaatataagatCTGTGGCATGTGTAACACTGATTGAATTCCACCAATTatgactgttttaaataaagagaaattaCATTAAGGTAACTATACTCCCATGTATACAGCTTAAACATCAATATTACATCTTTATAACTATCTGTACATTTATCCAAACATGCCTTGCCCTGTAGTGTGAGAAGAAAAGCATCCCGAGGCAGGAGGCATTTATGAAAATATCAGCAGACATTTTTCAAACACGCTGATTTTCAAGAAACTTAGAAGATAGAAGATCGAGGATTCCATCTTCTTGCTAAGCTCAGTCAGTGCCAATTTCTGTCCACCCCTCACCTGTCTGGATTGAAAACTGTCCAAATTCTTCCCTAACTTGCTCATTTGCATTGAAATTGAATCCTATTAGGCAGTCCTTGCTGATTTGTAACTTGATGATGTGACTCCAGAACAAAAGATGTAGAAATCCAACAGCCAGCAATCATATtcctgttttagtttgtttgaatgggcttcaaggcattaaagacagacaacaggagacacttcttcacacacagagttgtcacaatctggaacaaactccccagtgatgtggttgaagctgaaaacttgggaacattaaaaaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21183 lncRNA upstream 201805 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 220390 38089801 ~ 38117255 (+) True G17073
TU21157 lncRNA upstream 244966 38062034 ~ 38092679 (+) True G17064
TU21131 lncRNA upstream 350988 37948232 ~ 37986657 (+) True G17044
TU21093 lncRNA upstream 882244 37455176 ~ 37455401 (+) True G17006
TU21282 lncRNA downstream 40214 38391677 ~ 38392072 (+) True G17165
TU21343 lncRNA downstream 184598 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 274063 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 403058 38754521 ~ 38805946 (+) True G17230
TU21428 lncRNA downstream 727952 39079415 ~ 39079897 (+) True G17274
AMCG00016966 mRNA upstream 999 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016960 mRNA upstream 250109 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016951 mRNA upstream 1777664 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 1813014 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 2035752 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016970 mRNA downstream 44236 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 49267 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016975 mRNA downstream 97145 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016974 mRNA downstream 116687 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016973 mRNA downstream 127869 38479332 ~ 38492044 (+) True AMCG00016973
TU20555 other upstream 4236782 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4289925 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4665025 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5480205 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5834389 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 144588 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 4039834 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5774751 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6303189 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11051256 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile