RNA id: AMCG00017010


Basic Information

Item Value
RNA id AMCG00017010
length 2407
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00017010
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41953747 ~ 41957167 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCGATTTGCCGAAATGCATGAAACGTGTCGAATCTGCGATCCATCAACGGTGCGCGTTTTACTCTGCGTTACTGTTGCCGTATCAGCTGATTCAATTTAATTCAGTGCTGCAAATTGTGCCCATGTATAGGTATTTGGCATCTAATATCAGACATTTTTCTAACTCCGTGTCGCCTGGCTTGTTCGGGATCGCCGAGTCACTGTGGGGACGAGCAAATAAACTCTGTCGGCGATCCTACGCAATCATGGATCGAGCGGTAGTGCGCTGCGTGCCCTGCGAAAGCAAGCTGACCATCTCGTTCACTCTGGACGGCAACCAGAAGCACATGCTCCGGGATCAGACGGAACAGCTGGGCAGAGCGCTGTCCAGGATCGCCAACAGCGCCGTCAAGGGCCAGGCCAAGGCGAAGAAGTCCAAGCGGAATAAACCCGAGCAGGCGGACGTGCTGGACCCCGTGGTGAAGCTGTACTACAAGGACGACTGTGTGGCCGACGACGCGCTGAACGCGGACGCCTGGCAGGACGGCGCCGTGCTGCACGTCGGAGACAGCAAGTACAGGGTGGAGAGAAACCCGCCGACCTTCACCAACCTGGAGCTGCCCAAGTTTCTGTTAGCCGGCTTCCCGGTCTGCATCAAAGTGGACATCGAGTTCGGAGAGCTGAGGTACTCCCTGTTTAAGTGGTTTAAGGAAAGCATCCCGGATGCGGAGAAAAACGGCCTGGCACAGTGCTGGGTAGAGGCGGGCAACGAACGGGTCTTCACGCCGTCAAATGTGGACATTGGTCTGAAGCTGAAGGTGCAGTGCACCCCGGGGAACAATGACAGGTTTGGGCTTTCTAGGGAATTGGTGACGGCGACCACCGTGGAGGCAGGTCCGGGTACCTGCACGTTTGACAACAGGCACATGTACACCAACAGAGTGACGGACGATTCCACTATCAGAGCAGTGTCTTACAACATTTTAGCCGACATATATGCGCAAACCGAGCTCTCCAAAACGGCCCTGTATCCATACTGCGCCCCCTACGCCCTGGAAATCGATTACAGACAGAGCCTGCTCAAGAAGGAGCTGGCCGGCTACAACGCCGACGTCGTGTGCCTCCAGGAAGTGGACAAGGGCGTCTTCTTCGACAGCCTGTCGCCGGCGCTGGACGCGTTTGACCTGGCCGGGCTCTTCAGGATAAAGGAGAAGCAACACGAGGGTTTGGCCACGTATTTCAGGAGGTCCAAGTTTACCCTGCTGAGTCGGCACGACATCATGCTGAGTGAGGCGTTGGTGTCCGACCCGCTGCACCGGGACCTGTTGGAAACGGTGTCCACTAACGCAGCCCTGAAGGAGACGCTGCTCCAGAGGTCCACGACTCTACAGGTGACTGTTCTGCAGTCTGTCAAAGATGCCTCCAGAAAACTGTGTGTTGCTAATACCCATTTGTACTGGCACCCAAAAGGCGGACATGTGCGGCTGATCCAGATGGCCATCGCCCTGCAGCACCTCAGCCAGGTGGCATCCGAGGAGTACCCTGGCATCCCCTTGCTCTTCTGTGGGGACTTCAACAGCACGCCTTCCTCGGGGATGTACCAGCTGGCCACTCAGGGTTCTGTTTCTGAGAGTCACCCGGACTGGGCGtcagaagagcaggaggaactCTGCTCCCTAGCCCTGACTAACCCCTTTCAGCTGCAGAGTGCCTGTGGGGAACCAGCCTACACCAACTATGTGGGCGGCTTCCATGGCTGCCTGGACTATATTTTCATGGAGCCTCGAGCCCTGCAGGTGGAGCAGGTGATTCCCCTGCCCAGCCATCAGGAGGTCACCACACACCAGGCTCTGCCCAGCGTCTTGCACCCCTCTGACCACATTGCGCTTGTCTGTGACCTCAAGTGGAAATGACCGCCTCCGACCAAACatcagagctggagctggaaaCTTCAAATGCAAGGTGTCTCCCAGCCCAGCCTGCTCTCCTCATCTCGGGCAGGGGCAGCAACAGTGTGGACCTCTCATTGCCCTGCCCACCTAGCCCATCCTGGAGGGGTCTGCTGTTCAGGCTGGAAAGTGTAGGTCAGTCTCTCTGCCTATTCATCCTTAGTCTTTGTGCAAGGGAGCATAACTGTTCCACATCATCTCTTGGGTATATTAGGTCCGCAGTCCTCATTAACAAGGTAAATGCACACACTGGCAGTTACCAGTTATGAAATATGCAGTAGGAGTTTCCCTGCTCAGTCTCACACGCCTCACCTGCTCCACGAAAAACATGATGTCTAGAGGAcgaccacaggataaacactaCTGCTGATAATTGTGAAGAACTTTGAGACTCTGAAATTCCTTGGTAATTATGATCATGTTTTTTTGGGaattgtcaataaataaatcttctcCTCTCTGGGCTATTAGAAACA

Function

GO: NA

KEGG:

id description
K19612 PDE12; 2',5'-phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21741 lncRNA upstream 210974 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 236758 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 263548 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 280394 41671378 ~ 41673353 (+) True G17491
TU21691 lncRNA upstream 348356 41601948 ~ 41605391 (+) True G17482
TU21821 lncRNA downstream 19228 41976395 ~ 41978666 (+) True G17580
TU22180 lncRNA downstream 1095919 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 1278653 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1437126 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1512903 43470070 ~ 43470846 (+) True G17988
AMCG00017011 mRNA upstream 1232 41943549 ~ 41952515 (+) True AMCG00017011
AMCG00017000 mRNA upstream 283370 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00016996 mRNA upstream 457476 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00016997 mRNA upstream 488926 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016998 mRNA upstream 496545 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00017017 mRNA downstream 109705 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017018 mRNA downstream 137244 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017022 mRNA downstream 152862 42110029 ~ 42110696 (+) True AMCG00017022
AMCG00017021 mRNA downstream 199512 42156679 ~ 42210307 (+) True AMCG00017021
AMCG00017019 mRNA downstream 255442 42212609 ~ 42213383 (+) True AMCG00017019
TU21320 other upstream 3450115 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7852884 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7906027 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8281127 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9096307 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 434130 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2169047 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2697485 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7445552 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7756357 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile