RNA id: AMCG00017011


Basic Information

Item Value
RNA id AMCG00017011
length 2012
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00017011
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41943549 ~ 41952515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGGTTGTCTCCATGGCAAAACACAAGACATGTATGCTGCTTATgttaatattatatgtttttctaCATCTTTCACAGTGCTACAATCAAGTGCCTGCTGTCGTGGGTAAGAGACCACAAGTCCACTTATCCCAAACCATCAACGTTGGAAATGATGGAATGGGCATACAGAACAACAGTGCCTCAACAAGAGGGAGTCATTTGGCTACAGTTGAAATGCCTCTGAGAAGAGCACTGCAGCCTTCAGGTTGGCCATCACGCGCCCCTCCCAGATCTAGAAGAAAGCTCCTTCAGTCCTCAGGCTCTCTGCCCTACTCACAGTTGAATGTGGCAATCAATGGCAGAACCTGCATCCTCTTCAGAGCTAAGAAGTTGGCGATAAGGTTTAAAAACCACACACTGGTGGACTTAACGGAGAGGATTTTTGGTCCCAGTGCTCTAGTGGACACCAAAGGCTCCACCTGCAGTAAAGACAAAGCCATGCTCACTCTGAGATTTGGTGACGTGGAAGACCTCAAGGGACTTGTCATAAGGCTGCTGATGTCCAACATGTTTTATGAGTCAGCTGGTCAGAACTGGTTCACCCTGGACAGTGTGCACATCCATTATAACTCCACACTGGAGGCCACCTTCAATGCCACAGAGGTCTATGCTCCTGCCACCTACTCTTACCACTGCCAGCATGTCAGCAGCCTCCAGAAATATGACACACTACTGGTGCCCAGCTCTCACAGTGACAGCTCCATGCACTGGCACATCACCTTCACTGACTTTCAGATTCAAGCCTTCAATGTCCAGTCGGATCAGTTTGCCTCTGTCAGTGACTGTGCCACCTTCTTCACCCCTGCCATTCTCATGGGTCTCATCACCTCCCTCATCCTGCTGTTAGTGCTGGCCTATGCCCTGCACATGGTGGTGCACCTCAAGTCCATCGACCGCTACGAAGAGCACAAGACCACCGTCTACTTCCCCCGCAGCCCTGAAACCGAGTGTGCAGACAAGTACAGTTTGTAGGAGGCAAagccccccctcccaccctgaGAGACGATTCTGCAGAACTCGGTACATCACAGTCCAGTGGCTGTCTTGCCAAGGGATCCACAGCGCTgtgtgaaaaaaggaaacactgcTCTGACTCTCTACCCCACTGTGGCACCCAAGCTAGCAAGGCCTAGAGAGTCCAGGCAGAGATCAGCCAAGCTGAACACTAACCTCCTTGGTTTAAGTGCTCAAAAGCAGCTGACTGGGTTCATAGTGTACAGAGATGTTGAAAGATACTGGGAGGACACTGGTCTACTGTTTCCCCTTAACCATGCTTGGACTGTAGAAGCAGAGTGGAATCGTGAATCAAGCCCTGCCAGAGGTGGAGAAGAGACCAGGGAAATGATACTttcaacataatacaattatgtgGTATTTGAATTGGTCTCCGAAGTGTCATATCAAAGCAATTCCCAGAGAATAACAGCAGTTTCACCTAAATCTTCCAGCTTTACTGAACCCACAAGAAATATGTAGGACATCTGTACACGTGTCTTCATTTGGTTTGTCACTGTTATTAGTGTGGAAAATCatcattttagcatttttattaCCAGAACTGCAATGCTTTACTGTTTCAGAAGAACTTACAATGAATATCTTGATTCtgcctgtctgtttgtctgcttTGGACTTTCACATCAAAGAACCTTTTAACATgttcaattgaaagcaatttTGGATCATGGCAGCTTTTTGATGCATTAAGTTCATCGTCTATTTATATCACACCATCGATACCACTATAAGAGAAGATAATGACAAGATGTGGGTGCATAAAGTAAATTTTGCATGCCAGTGGTTTacaataatgtgtgtatatggcAATAATGACACTGGAAAAAATCATTAGCATTGTGCAATTGATTAGTCATACTAATGGAAAGAACAGGTTTTTATAACTACCAAGTGctgtaaatgaataataaactatTGTCAGACCATTGAAATATGtggtatttaataaaac

Function

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21741 lncRNA upstream 200776 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 226560 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 253350 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 270196 41671378 ~ 41673353 (+) True G17491
TU21691 lncRNA upstream 338158 41601948 ~ 41605391 (+) True G17482
TU21821 lncRNA downstream 23880 41976395 ~ 41978666 (+) True G17580
TU22180 lncRNA downstream 1100571 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 1283305 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1441778 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1517555 43470070 ~ 43470846 (+) True G17988
AMCG00017000 mRNA upstream 273172 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00016996 mRNA upstream 447278 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00016997 mRNA upstream 478728 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016998 mRNA upstream 486347 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016994 mRNA upstream 496939 41433692 ~ 41446610 (+) True AMCG00016994
AMCG00017010 mRNA downstream 1232 41953747 ~ 41957167 (+) True AMCG00017010
AMCG00017017 mRNA downstream 114357 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017018 mRNA downstream 141896 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017022 mRNA downstream 157514 42110029 ~ 42110696 (+) True AMCG00017022
AMCG00017021 mRNA downstream 204164 42156679 ~ 42210307 (+) True AMCG00017021
TU21320 other upstream 3439917 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7842686 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7895829 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8270929 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9086109 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 438782 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2173699 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2702137 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7450204 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7761009 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042897 False 2369 mRNA 0.44 7 NC_007134.7 19558574 ~ 19583814 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_05795264_05798555.mRNA True 2191 mRNA 0.42 5 CI01000001 5795264 ~ 5799834 (+)