RNA id: AMCG00017020


Basic Information

Item Value
RNA id AMCG00017020
length 2849
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00017020
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42222768 ~ 42239287 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCATTTGTCAGGCATTTATGTCGGCAAAAAAGGGACTCGCTGTCGCTACTGTACTAACTTCCCTTTAAAGGCGCTGCAACAAAGTGATAACCCTGCTGCAAAATCGGGTTTGAATCAGCACAAGAGATCAATCAAAATGGGTTTGTTAATAATCTCTGCGTTTTAAAGACACTTCACCTTCGCCAGGGGCTCGACTGCGAAGGGGGTCGTTGTACCAACCGGAAGACGATAAAAAAAGGTGCCGTGCAGTGTCAGAGAGATGGATATGGATGTGCTGAACATGTTTGTCATCGCAGGGGGGACTTTGGCCATCCCCATCCTGGCCTTTGTTGCCTCCTTCCTCCTGTGGCCCTCGGCACTCATCAGGGTCTATTACTGGTACTGGAGACGAACCCTGGGCCTGCAAGTGCGCAATGCCGATTGCGGGGGGTATCGCTTCTGTTACTCCTACAGAGGGAAGCCTGGGACCCGGCCTTCCATTCTCATGCTGCATGGCTTCTCTGCACACAAAGACATGTGGCTTTCTGTAGCAAAGTTTCTGCCAAAGCACCTTCATCTGCTGTGTGTGGACATGCCTGGACATGAAGGCACCACCCGCACCGGTCCTGAGGACTACTCCATCGAGGGCCAGGTCAAGAGGATACACCAGTTTGTTGAATGCATCCGCTTGAATAAGAAACCCTTCCATCTGGTGGGCACCTCCATGGGTGGCAATGTGGCTGGGGTGTACGCCGCTCGCTACCCATCAGACATCAGCAGCCTCACTCTCATCTGTCCTGCAGGCCTGCAGTATCCAAATGAGAGCAAGTTTGTGAAACAGCTGCGGGACCTGGAGAGGACCAACAACATCCAGGGCATTCCGCTAATCCCGTCCACGCCCGAGGagatggaggagatgctgaagTTGTGCTCTTATGTTCGTTTCAAAATCCCTCATCAGATTCTCCAGGGATTGGTGGACGTTCGCATTCCACACAATGATTTCTACCGAGAAGTATTCATGGAGATTGTCGGAGAGAAATCAAGGCACTCCTTACaggaaaacatgcatttgatcACTGTTCCTTTACAAGTCATTTGGGGAAAACAGGATcagGTGGTTGATGTCTCTGGGGCCACAGTCCTGACTGAGGCCATCCCAGGCTGCCATGTGGACCTGCTGGAGAACTGTGGCCACTCTGTGGTGATGGAGAGGCCCAGGAAAACTGCCAAGCTCATCCTGGACTTCATCATATCCCAGCAGAATGCCAGCATGGGCAGTGACAAGAAGATCTCCTGAGAGAGCACaaagattatgattattattaatattattattattaattattgttattattattactattaggtTTTCAAATCTATGTTCTGTAAATAATTAGTACCTTTAATTTTGGATCCGGTCATCTCTCAGGGAGTCCCCTCTTTAAGTTGCAAGATACTCAGTGTACCAAAGCCCCTGAGAACATTAGGATTTTAGAAAGCAGAGGCTCAGATTTATAGCACTGTAACATGGAGCAGAAACACACAACTCTTCAGAGCTGATGGAACTGCTCATGTGCAGACAAAAAGGTTAAAAAGAAGCAAGTATCTTACCCTGGCTTGTTTTTGTGCACGTAGGCCCTACTTTGGTGCAGGCAGAGAAAGTCCTGCTCTCTTAATTGACAAGTAAGTCCTCACGctttctttatttgcttttacCTTTTAAGGCTTATAGACACTATCAAGTTTGGTTTCACATGAACAGACTGGATCTTCATTATCAGCATTCTCTCCACCCTGCATAATTCCTGGCAAGGACATTCTGGATTACAATGCCACAAACTCAGTTAGCCCAGCGGAAAAGAATATAACTTGTGGTGGTTTCAGGTCAGACTTTTGTAGTGCACTGCTGTGCTGGATCACTGAAGGATAAGGATATAATGTGATAATGATCAATTCCTACATGTCTATCATGAGCTTTAAACACAGCATTATGTTCTTGCATACACAGGGTAGTTGGCTAGGTAAATAATGGATCTCAGCAATGAAACCCATTTGATAAACTCCCCTGTAGCTAGCTTGCATGTGTTTCACGTATCTCCGAGAGCCTTGGTCATAAAGGTTATGCATTCAGAAACCCTGCCTTGGAACTGGACCCCAAGTGTAGTCCCCATTCATGGCCTTCAGCACAAAGCTAGGGACACTGAAAGTCCATTCCACTTTTTCCTTACAATGTGTGACATTTTCTCCTTTAATTGTATAGTTTGTTAATGAAggtgttttattgtaaaaacaagCCCTAACAATGAAGCACTACAGTCCTCTTCAGCATTACCTGTGcttattcagttttgttttttgctttgttattGGCTGTGAGCTGATTTAGATTAATGAGAAGCAAAGTTAAACTCTTGTGCCATGCACAAGACTTTTATTTGTGAACAGAAACAATACTGTTGTGAAATTTGTTCTCCACAAGGCTTGAAATATTTAAGCAATAACTAGGGAATGCTGGGAAACAGGAATAAAAATACAGGTGTTCCAATATCATGGTGCTTTTAATGGGAGGAAACCACTTGAGACTGGATCTTTAACtactaattaaaatgtgtccaATAAGTAAATCATTAAAGGAATGGATTCTATGAATTCTGTGCTAGTAGGATTGTGGGACGATAGTATATTGATACTGTTGGTAAATATACAGGGGTGGTGATGTAGTGTAATGCTATAGGCATCTTAAGGACTGCTGCATGCTCCAGCCTGTTCAAAGAAATAGTATCTGTTGTATGAACTTAAGAACTAGGTTGATATCTGTCTCAATCTCATTCATTCCTGATTTATAGAAGAATAAACTATTCTGAC

Function

GO: NA

KEGG:

id description
K13700 ABHD6; abhydrolase domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 244102 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 479995 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 505779 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 532569 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 549415 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 813799 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 996533 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1155006 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1230783 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1260883 43500170 ~ 43500476 (+) True G17987
AMCG00017019 mRNA upstream 9385 42212609 ~ 42213383 (+) True AMCG00017019
AMCG00017021 mRNA upstream 12461 42156679 ~ 42210307 (+) True AMCG00017021
AMCG00017022 mRNA upstream 112072 42110029 ~ 42110696 (+) True AMCG00017022
AMCG00017018 mRNA upstream 122453 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017017 mRNA upstream 153094 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017031 mRNA downstream 4314 42243601 ~ 42245029 (+) True AMCG00017031
AMCG00017025 mRNA downstream 7067 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017024 mRNA downstream 29602 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017033 mRNA downstream 50459 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017032 mRNA downstream 70766 42310053 ~ 42311207 (+) True AMCG00017032
TU21320 other upstream 3719136 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8121905 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8175048 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8550148 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9365328 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 152010 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 1886927 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2415365 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7163432 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7474237 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile