RNA id: AMCG00017056


Basic Information

Item Value
RNA id AMCG00017056
length 1974
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00017056
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43308695 ~ 43314951 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGAAGAAGACTGCAGTTCCCAGAGGGCCTTGTGTGGGACAGTTGCACGATGGGAGGAAGCGAATGAAGCGCATGTTGTGGAAATGACAAGCGACTAATGAAACAGTTTGTTTCAGAGCTGTTTGAGCAGAATAAGTTTGAGCTGAGGATAGCAGGGGGAGCTGTGCGGGACCTGTTGTCAGGCAAACAGCCCCAGGATGTGGACTTTGCCACCACAGCCACCCCCAGCGAGATGAAGAGCATGTTCCAGACAGCGGGCATCAGAATGATCAACAATAAAGGAGAGCAGCACGGCACCATAACTGCCAGGATCCACAACCAGAATTTTGAAGTGACCACACTGCGGATTGACGTGGTGACGGACGGGAGGCATGCAGAAGTGGAGTTTACCACTGACTGGCAGAAAGATGCTGAGCGAAGGGACCTCACCATCAATTCCATGTTTTTAGGATTAGATGGCACTCTGTACGATTACTTTAACGGGTACGAAGATCTCAAGAAGCGAAAGGTCAGGTTTGTTGGAAGTGCAAACCAGAGGATCCAGGAGGATTTTTTGAGGATTCTACGATATTTCAGGTTTTATGGGAGGGTTGCAGAGGAGCCTGGAGATCATGAGCCTGAGACACTTGAGGCCATTCGAGAGAATGCCAAAGGGCTGGCTGGCATCTCAGGAGAGAGGATCTGGGTGGAACTGAAGAAGACTCTGGTGGGAAACCATGCGGCCCACTTAATAGACCTCATGTACGACCTTGACGTAGCACAGTATATTGggTTACCTGTGGAGGGGAATCTAGTGGAGCTGAATCGAGTGTGGAAACACGTACAGAAGTGGTCCCCAAAGCCCATGACTGTCCTGTCTGCATTGCTCAGGGCAACAGAGGAAGTGGAGAAAATCGACCTGAGGTTAAAGATCTCTAAAGAGGAAAAGAACTTGGGTGTGTTCCTGGTGAAGTACAGAAGAGACCTGCTGAAGGCAGAAGATGAATCAGACTGTTTGAAGCCATACAGAGACTTTATTATTGATTCCAGGGAACCAGATGCCCAACACAAAGTCTGTGAGCTCCTGAAGTACCAGGGGGAGGAGCAGCTGCTGGCTGAAATGGAGAAGTGGTCCATCCCACGCTTTCCAGTCAGTGGGCATGACCTCCGGAAAATGGGCATATCTTCTGGCAAGGAGATCGGGACAATCCTGCAGAACCTGAGGGAGATCTGGAAAAAGAGCCGGTACCAAATGGACAAGGAGGAACTATTAAACAATGTCAAGTCATAAATAGAGAAGCTTCTGTTTCCTGCCCCTTCAGACCATTgctaaaaaaaggaaaaactgccATTGCTCCACTTTTTCCATAACCCGTTTCTGACGCTACTGAAAATATTGGAGGTGAAAGTTAAAGGGATTGATCTTTCCAGAGGAAAAGTATCtgcttgaaatgaaaaaataagtttacacAAAAGCATAGGGAGGTTGGATTAACAGTTTTTGTGTTCCTCCATGAAGTGGCTTTGCAGGACGACTCCCATCCCTCTTTACTTGTTGTTACTACATGGGGTGTTCAAACTTGTGATTCATGGGTATAgctgtcaaaaaataaatcattcatcAATTTACTGTTAATAGTAGTGACATAAGGTAATGTAAGCATAATTAAAgggttttgcattttacaaaacaaattaaatgtgatatTCACAATACCTATATATTTTGCGTACATTCAACCCACCAACACAAGTGCACTTTGCTACTTTGTATATTGACAGCAGATTATGCAGACCTGCAAGGATAGTAATTACTTTAGTTTTCTGCCAGTTGTTTAAAATTAACCGTTATTTATGACCTTggtgaaatataaaaatgatcaTGCTGCATGTTTCATGAAACTTCTTTCTAGCTCTtgtttgaattgtattactCTGAGAAACACTGTTGTACGTGTACAGTTAAAACTTTCATCTTATTCTTTCAAGTGcat

Function

GO:

id name namespace
GO:0042780 tRNA 3'-end processing biological_process
GO:0009022 tRNA nucleotidyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22213 lncRNA upstream 72659 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 196059 43053086 ~ 43112636 (+) True G17882
TU21821 lncRNA upstream 1330029 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1565922 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1591706 41713810 ~ 41716989 (+) True G17514
TU22284 lncRNA downstream 79342 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 155119 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 185219 43500170 ~ 43500476 (+) True G17987
TU22414 lncRNA downstream 787075 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 802015 44116966 ~ 44201038 (+) True G18084
AMCG00017054 mRNA upstream 184292 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017053 mRNA upstream 211180 43095638 ~ 43097515 (+) True AMCG00017053
AMCG00017042 mRNA upstream 456401 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017045 mRNA upstream 459029 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017046 mRNA upstream 464384 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017055 mRNA downstream 2739 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017066 mRNA downstream 50876 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017065 mRNA downstream 56707 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017076 mRNA downstream 229703 43544654 ~ 43546804 (+) True AMCG00017076
AMCG00017073 mRNA downstream 373109 43688060 ~ 43731559 (+) True AMCG00017073
TU21955 other upstream 910908 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4805063 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9207832 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9260975 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9636075 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 811263 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1339701 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6087768 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6398573 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7236929 50551880 ~ 50552985 (+) True G19113

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064331 False 1921 mRNA 0.45 8 NC_007117.7 43225795 ~ 43233700 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_11092046_11095664.mRNA True 2055 mRNA 0.43 7 CI01000340 11091295 ~ 11095664 (-)