RNA id: AMCG00017082


Basic Information

Item Value
RNA id AMCG00017082
length 2877
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00017082
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44388912 ~ 44411339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAAGTCAGTGCATTTCCCAGGAGTTCAGTTCATCCAGACGTGCCATATAGGTTCATTATACAAACTTTAAATCATTTCGTACTTTCAGAAATGGCAGAAAACACGGACATCGACGAAAGTCTGTATTCTCGACAGCTGTATGTGCTGGGGCATGAGGCAATGCTCCGCATGAAGAAGACTAATGTCCTGATCTCAGGAATGAGGGGTCTGGGAGTGGAAATCGCCAAGAATGTAATCCTAGCCGGAGTCAACCAAGTCACCATCCAGGATGAGGGGCTGGCAGGATGGGCAGACCTGTCCTCTCAGTTCTACTTGGAGCAGGGTGATGTGGGTCAGAACCGGGCCGAGTGCTCCCTCAACAAGCTGTCTGAGCTCAATAATTATGTTACGGTCTGCTCACACACTGGGCCTCTCACTCAGGACCTGCTGGCCCAAAACCAGGTTGTGGTGCTCACCAATTCATCTTTGGAAGAGCAGCTTCGCATTGGGAGTTTCTGTCACTCAAACGGCATTAAATTCATTGTAGCTGATACTAAAGGCCTGTGTGGGCAGCTGTTCTGTGACTTTGGGGAGCAGTTTGAGGTGATTGATACAAATGGAGAGCTGCCTGTTTCGGCAATGATTTTGCACATCTCCCAGgGCAATCCTGGGATAGTTACTTGCATGGATGAGCATAACCACAGGTTCCAAGATGGAGATTTGGTGACCTTCTCAGAGGTCTGTGGAATGACGGAGCTCAATGGTTGTGAGCCCATGCAGGTCAAAATGCTTGGTCCGTACACATTCAGCATCTGTGACACCTCTGGCTTTTCCTCGTACGAGAGAGGTGGTGTTGTTACGGAGGTTAAGAAGTCAAAGACGGTCACTTTTAAACCCCTCAAGGAGGCTCTTGTTCACCCAGATATTGTGCAGAGTGATTATGGGAAGTGCGAGCGCCACAGGACATTGCACATCGCGTTCCAGGCTCTTCATCAGCTGCTCAAGGAAACGGGCCACCTGCCGACACCCCGAGCACAGGCTGGTGCAGAATTATTGCTTGCCATAGCTAAGGAACTGAATAAGGACTCCCACCCTGACACGCATGTGGAGAGGTTAGACGAGAGCATCGTGTGCAAACTGGCGCTGACGGCAGGAGGAGACCTCAGTCCCGTCAATGCCTTTATCGGGGGGCTGGCAGCACAGGAGGTCATGAAGGCCTGCACTGGCAAGTTCTCCCCTCTGGTTCAATGGCTGTATTTCGATGCTCTGGAGTGCTTAcccgaggaggatgaggagcaACTTCTGACTGAGGACACCTGTGCGCCCAGACACTGTCGCTATGATGGTCAGATTGCTGTGTTTGGGACCGCTTTCCAGGAGAAGCTGGCCAAACAGAAGTACTTATTGGTAGGAGCTGGTGCCATTGGTTGCGAGCTGTTGAAAAACTTTGCCCTGATAGGTCTGGCATCGGGAGAGGGTGGGCACATCACTGTGACTGACATGGATTCAATTGAGAGGTCCAATCTGAATCGACAGTTCCTGTTCAGGCCCCAAGACATTGGTAAATCGAAATCGGAGACGGCCGCCCAGGTGATAAAGAGAATGAACCCTGCTCTCCGCATCACAGCTCAGCAGAACAGAGTGGGCCCTGACAGCGAGCAGGTTTATGGCCATGATTTTTTCTCCCAACTCGATGGGGTGGCTGCTGCTTTGGACAACATTGAAGCCAGAGTGTACGTTGATGGACGGTGTGTGCAGCACCAGAAGCCCCTGCTGGAGAGTGGGACTCTTGGTGCCAAAGGACACACCCAGGTCATCGTGCCCTTTTTGACGGAGCCATATGGAACCGCCAAGACTGGGCCAGAGAACGCCATCCCCCTGTGCACCCTGAAGAACTTCCCTCACCGCATCGAACACACCCTTCAGTGGGCCAGAGATGAGTTTGAAGGGCTTTTCAAAATCCCGGCTGTAAATGTCAACCAGTACCTGAATGACTCTGACTTTGTGCAGCACACCCTGAGGTTGGACGAGGCACAGTCTCTGGAGATTCTGAAAGGGGTGTACAGCCACCTGGGGGAGCAGCGGCCACAGAACTGGGATGACTGTGTGAACTGGGCCCGCCAACGATGGGAGAAGCTCTACAGGAATGATATCCGCCAGCTACTACACTGCTTTCCCCCAGAAGAGAAAACAAGCTCTGGCCTGCCATTCTGGTCAGGGCCTAAGAGATGTCCCCATTCCTTGAGCTTCGACCCAAACAATACCACCCATATGgactatattgtagctgcttcCAACCTGTATGCCCAGATTTATGGCATTGGCGGCACCAGAGATCGCAGCGCCATTCTAAACACACTCCAGGGTGTTATTGTTCCAGACTTTTCTCCCAAATCCAATGTGAAAATCCATGTGACTGACCAAGAGATGGAAGAGGAGAAGTCGGCAGTGGACAAGAACAAACTGGAAGAGTTGAGCAAGAATCTGGCATCTCCACAGAGTTTCAACATCTCCAAGATGCACCCAGTAGAGTTTGAAAAGGATGATGACACCAATTTCCATATGGATTTCATTGTTGCTGCTTCGAACCTGAGAGCTGAGAACTACGATATCCCCCCAGCTGATCGCCACAAGAGTAAACAGATTGCTGGAAGTATCATCCCTGCCATTGCTACGACAACAGCTGCTGTGGTGGGTCTGATGTGCCTGGAGCTGTACAAGATCGTCCAAGGTCACAAGCAGATCAGATCCTACCGGAATGGCTATGTGAACCTGGCTCTGCCATTATGTACCATGATGCTGCCTCTTGGACCAAAAGTGTTCAAAGTGAGTAACTGCTGGTTGAAGTGCTACTTTCCGAAGTCAGGAAAAGGTTATTTCTCCATTTCGAATTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22471 lncRNA upstream 963 44387443 ~ 44387949 (+) True G18127
TU22469 lncRNA upstream 11684 44376993 ~ 44377228 (+) True G18125
TU22423 lncRNA upstream 187874 44116966 ~ 44201038 (+) True G18084
TU22414 lncRNA upstream 285513 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 888436 43500170 ~ 43500476 (+) True G17987
TU22536 lncRNA downstream 212028 44623367 ~ 44667457 (+) False G18186
TU22537 lncRNA downstream 251050 44662389 ~ 44714164 (+) True G18186
TU22555 lncRNA downstream 258084 44669423 ~ 44670878 (+) True G18196
TU22557 lncRNA downstream 259953 44671292 ~ 44671870 (+) True G18197
TU22623 lncRNA downstream 537695 44949034 ~ 44952964 (+) True AMCG00017099
AMCG00017081 mRNA upstream 2926 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017080 mRNA upstream 17404 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017079 mRNA upstream 228441 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017078 mRNA upstream 250981 44126214 ~ 44137931 (+) True AMCG00017078
AMCG00017070 mRNA upstream 533588 43843414 ~ 43855324 (+) True AMCG00017070
AMCG00017083 mRNA downstream 34282 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017084 mRNA downstream 56780 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017088 mRNA downstream 245448 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017090 mRNA downstream 281644 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017096 mRNA downstream 304052 44715391 ~ 44739801 (+) True AMCG00017096
TU22431 other upstream 257310 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 1991125 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5885280 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10288049 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10341192 34047371 ~ 34047720 (+) True G16546
TU22550 other downstream 243313 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 4991380 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5302185 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6140541 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 6148111 50559450 ~ 50561788 (+) False G19114

Expression Profile