RNA id: AMCG00017083



Basic Information


Item Value
RNA id AMCG00017083
length 366
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00017083
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44445621 ~ 44453494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTCAAGGATTTGGAAGTGGACAACAATATTAAGAACTATGTTGCAGGGAAGGACTATACCATCTGGGACCATTATCCGATTCAGGGTAGAAAAAACTGCCAAGAGGAAATGACTCTGGGGGAGCTTATTGAGCACTTCAAGCATCTGTATAACCTGGAGATTACTTCCTTATTCTATGGAGAAGCTTATCCCTACAACTCTAAGTCAGAGAGCCACCgtgagaaactgaaaaacagGGTGTCCGATGTGGTGAGGATGGTGAAAGACATTCCTCCACATGTGCAAGTGCTGGAGTTTGTTCCCTGCTTTGCAGAAGATGAAGATTGTGAAATGATTCCACCCATTCGCTACCAGTTCAGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22471 lncRNA upstream 57672 44387443 ~ 44387949 (+) True G18127
TU22469 lncRNA upstream 68393 44376993 ~ 44377228 (+) True G18125
TU22423 lncRNA upstream 244583 44116966 ~ 44201038 (+) True G18084
TU22414 lncRNA upstream 342222 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 945145 43500170 ~ 43500476 (+) True G17987
TU22536 lncRNA downstream 169873 44623367 ~ 44667457 (+) False G18186
TU22537 lncRNA downstream 208895 44662389 ~ 44714164 (+) True G18186
TU22555 lncRNA downstream 215929 44669423 ~ 44670878 (+) True G18196
TU22557 lncRNA downstream 217798 44671292 ~ 44671870 (+) True G18197
TU22623 lncRNA downstream 495540 44949034 ~ 44952964 (+) True AMCG00017099
AMCG00017082 mRNA upstream 34282 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017081 mRNA upstream 59635 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017080 mRNA upstream 74113 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017079 mRNA upstream 285150 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017078 mRNA upstream 307690 44126214 ~ 44137931 (+) True AMCG00017078
AMCG00017084 mRNA downstream 14625 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017088 mRNA downstream 203293 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017090 mRNA downstream 239489 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017096 mRNA downstream 261897 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017102 mRNA downstream 414420 44867914 ~ 44876540 (+) True AMCG00017102
TU22431 other upstream 314019 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2047834 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5941989 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10344758 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10397901 34047371 ~ 34047720 (+) True G16546
TU22550 other downstream 201158 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 4949225 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5260030 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6098386 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 6105956 50559450 ~ 50561788 (+) False G19114

Expression Profile