RNA id: AMCG00017090


Basic Information

Item Value
RNA id AMCG00017090
length 5340
RNA type mRNA
GC content 0.51
exon number 43
gene id AMCG00017090
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44692983 ~ 44714100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCGAAAGAAGAGACGCACTTCCGTGGACAAAAGTGAAAGCACTACATCGGATACCACTAAGCCGAAGAAGAGTCGTGTTAGTGGACGTAGTGCAAAGCCCACTGCACAGGACAATACTGGCGAGTCTCTGTTCGTCCAGTTGCTGCGTGAGGCAGGGGTCTCTCTGAGATACAGCAACACACCCAATGAGATTGCTGTGGATCAAATTGTGTTCCAGAAGAGACTGCAGCGAAGCCTGAGAAAACATCCTCGCTACCCCAATGTAATTCAGGAGTTTATTGCTGGGCTAGAGTCCCACATTGAAGACCAGGAGAAGTTCAGGAACTGCCTGCTGCCATGTGCCCCGCGGTCATCTGATGGTGATGCCAGCACTTCATACCAGGAGAGCCTCGTCAAACTGCTGCTGGGAATCGAGATGCTTCAGCCAGCAATCATAAATACCTTATTTGAGAAGCTCCCTGAGTTCATGTTTGATGGGATTGGAGAGGATGGGCTGAATATTCCCCATATTATTATCAACCAGTTCAAGTGGCTGGATAGAGTAATAGACAGCAAGGACTTGGCCAGTAagttaatgcagctggtggccgtAGCGCCAGGGGAGATCCAGCGTGACATCATCACCAGCCTGCCGGAGATCCTGGATGACACGCAGCACAATGACATCGCGAAAGAGCTCAACACCCTGCTTCAGCAGAACACTCAGCTCTCTGTGCCCATACTGGATGCCCTCTCCAGTCTTAACCTGAGCCCCACCCTGCTGTCTGAGGTGCGCCGAGCGGTCATGGCAACTCTCTCGGCTGTGGAGCTGGAGGACTTGCCTGTGGTTGTGAAATTCATTCTGCACGCCATCTCTGGACCCGAGGCTATCGAGGTTGTCGGTGACCTCCGGAAGAAGCTGGAGCTAGAGTCGTGTGTCTTGCCCCCCGCGCTTCAAGCCTCCCAGAACAGACTGAAGAACAAAGCAGTGGCTGGATCTTCCCTCAGCAAAGCAGACATCAGCAGTCAGAACTGTGTCTCTCTGGTCTTAGATGTCATCAAATCAGCTGTTCGCTTTCAGAAGACTATCTCTGAGGCCTGGCTAAAGGCCATTGAGAATGTGGAAGCAGTGGAAGACCATAAGGTCATTGACCTTCTGGTGTTGTTCATCCTCCATTCAACCAACGCCAATCACAGCCGGCGTGGAGCAGAGCGTGTCCTGCGGATGAAGGTGCGGGGGGGGCAGATTCGGGAGACTCTGCTGCAGACTGCGTTCCGGGGTCACTCCCTGGTGATGCGATCATACTTCTCTGCCATCCTGGCCCTGGCACAGATCCTCCTGCGCTCCCCTGATCCCAGCGTGGTGACATTCGGCAGCCACATGTACAAACAGGCTTTCACGGCCTTCGACTCCTACTGCCAACAGGAAGTGGTGGGCTCCCTGGTGACTCATGTGTGCAGTGGCTATGCTCATGAGGTGGACGTGTCTCTGGAGCTCATGTGTGAGCTGGTGACCCAGCGGCCCTCTGACATGGCTCCCTATGCCGTCTTTGTCAAGGGAATCCTGGACTACATGGAGAGCCTGACGCCTCAGCAGATCCGAAAGCTCTTCTTCATCCTCAGCTCTCTGGCCTTTGGGCGAGACCCACAGGGAAACCACATACAGGATGACATGCACATTGTGATCAGGAAGCAGCTCTCCAGCACAGTGGCCAAGTACAAGCGCATCGGGATCATTGGAGCCGTGATGGTGGTGGGCAGCATGGGCTCCAGCAGGAACAACTCTGAAAGTACTAGTTCACAAGTGCCCTCTCTGTCCAAGGAAACGTACAGGCAGGTGACAGCCCTGCTGGAGCTGGTGAGGTCATGCAGTGAGGGCTCCCCGGAGGCGGCGGCCTTGTACTACGATGAGCTAGCCAATCTTGTACAGACTGGCCACCTGGACCCACTGGTGCAGGAGTGGATAGGAAAAAGTGTGCTTGAGGATTTCCAGGAGGACTTTGTGGTGGACCTTGGGCCGGAAATGAAAGGAACATACCCACTGCCTGCAAAGATCATGTACAACCTGGATGAGGAGGAGAGCCAGGGGGGAATCGCTGTCAATCTCCTGCCTCTACTGTCTGAAGACTTCAACCACAAGGGTGGACAGTGGAGTCAGACTGGTGAAGAGAGCAAGAGGCGTGTGTCTCCACTGTGTCTGGCTGCTTTCTTCCGCCTCCTGCGTCTCTGTGAGGAGGAGCAGCACCAAGGGGACCTGGAGGAGATCGACGCCCTGCTAGGGTGTCCTCTGATTTTGACTGACCTAGATGTTGTGGAGAAGATGGATTCCCTGTCCAAGCCTGAGAAGGAGTTTGTTTGCTCGTTGCTCTTTCATACCATCAACTGGTTCAGAGAGGTGGTGAATGGGTTTTGTCAACAGACAGACCCTGAGATGAAGGTGAAGGTGATGACCCGTCTGCAGAACATCACTTACCTGCAGAGTATCCTGGAGAAGTGTTTGGCAGcaaCCCCAGCCTATCTGCCTCCTCCTGCCAACTTTGACTGTGAAATTGCAGAAGTGGGGCCCCCAGCCAGCACCACCATTCCTGccaagaaaggaaagaaagAGCGGCCTGGGAAGAAGCGCAAAATCCCGGCCAGCAAGAACTCTTCAGGCGACAGCTCTCAACTGGAGGAGGGGGCAGAGGCTGAGGAATCCCAGCATGAGAAGgACAACccggagaaggagaaggaggaggggaaggCAGGAGTCAGTCTGGCCTCTTACCGGCCTTATTTCAGGGAGCTGGACGTTGAGGTTCTGGGTGTGCTGCAGTGTGGCCTGCTCTCCCGTTCCCTCCTGGACAGTGAGCTTCACACCAAGGTGACCGAGGAGGTGCAGCTGGGCCCCTCAGAGCTGGTCTTCCTGCTGGAGGATTTGGCCCGTAAACTGGACTTCAGCCTGGCTTCCTCTGCTGTCAAGAGGATCCCCTTTCTTAAGGGCAAGGCAGATAAGAGTGTGGGCTTCTCTCACCTGCAACAGAAGAGTCCTTCTGACATCACATCCTGCTGTGTGCGGCTGCTGCCTGCTCTTTGTACCCACCTGGAGAACTCTCACAACTACTTCCAGGGCCTCCTTTCGGAGAACCACGGCGTGGTTGATGCCCCAGGGGTGGATGTGAAGGAACATCAGCTCATGTCCTCCTGCTACCAACTGCTGCTCCAGGTTCTGCACACGACCTTCAACTGGAATGGATTCACCCAACAGGAGAACCGCAAACTGCTGAAAATGGCCCTGGGCGTGCTGGCTGGACGTCTGAAGGAGAAGGAGGTTGAACTTGGTTTAGAGGAGCTAGTCAGGCATACTTTTGAGTACTTGCTGAATTTCCGCAGCACCATGCCCAACTGCTCCACTGCCCTCTCTCTCAACCAGTTGCTGATGGTAGTGGCAGAGCGTGCTGGTCCCAGTGTCTCTGCTTACAGGGAACAGATAGGGTCTCTTTCCCGACAGTTCCTGTGCCAGGAGTGGGTGCTGCCCAgtggagagcgagagagggggaACAAGTACAACGAGACCCTTCAGACCTTCCTCAGTATTTACCTGGAACACACGGATGATGTTCTGAAGGCAGTTGAAGAGATAGCCGGGGAGGGAGTCCCTGAGCTCATTAACACTACAAAGGACGGCTGCTCCAAAACCTTCCCCACTCTCAGCAGGCAGACCTTCTTGGTTTTCTACCGCGGGTTGATGGCAGTGCTGGAGAAAGCGGTGCGGAGGATTCCCCCTGGGAAGCAGACAGACTCTGGCGAGATCCAGGGCGAGAAGCTTTTGACCTGGAATCTGGCCGTGAGAGATTTTCATATCCTGGTGAATCTGGTGAAGGTATTTGACAGCAGAACTGTGCTGGGTGTGTGTTTGAAGTATGGCCGCCTCTTCGTGGAAGCTTTCCTGAAGCTGGGGATGCCATTATTAGACTTCAGTTTTAAGAAGCATAAGGAAGATGTTCAGAACTTGCTTAAAACATTCCAGCTGAGCACCAGACAACTTCATCACATGTGTGGGCACTCAAAGATCCGACAAGACACCGGACTTACAAATCACGTGCCAGGGCTGAAGAAGAGCCTGGAGCAGTTTGTGTATCGGGTGAAGGCTATGCTGATTCTGAACAACTGCAAAGAAGCCTTTTGGTTAGGAAACCTCAAGAACAGAGACTTGCAGGGTGAGGAGATCCTGTCCCAGCGTGCTCAGGACAGTGAAGAGGAAGATGAAGAGGAGGCTTCCCAGCTGCCACAGGAGCAATCAGAAGAAGAGGAGGAGAGGAGTGATTCTGAAGTGAGGAAGAGTGGCCAGGAGGACGACGAGAGCACGGACGACACTGACTAGAAACCTGGTGGAGGAAAGAGACACTGGAGGATGGTTCTACCAATGCTCCTCTCAATACTGCCTGTTCCTGTGACACAAATACCAAAGCCTCTGTACTGTTTATATCTGATCCTCCAGTGTCACCCCCCCCCACCGCTCCAGAAATAGTTTCAGTGAAGATGTCCATTTCTTTTTGATATTGATTAGCACATATTGGGGCAGTTGCAAAAAGGTACACCAGCGATCTTAAACTGTAGAAAGCATGGTTTGGACCAGACGTGAATGAAAAGTAACCTCGGGCCTCCCACCTATACAtgaatgtgaaaaagaaaatataataccCTTCAGTGGATGTCTACTGACTAAACATCTATAATCAACTTTTATTCAAGATTGTCCAAGGTTtgattcagaaatgttttataagCACTATAAAAATAATCCATCCTTTGCAAATATTAATACTGAATTATGATCTTGCAGTTGTGTCTTGTTACATTCTGTAGCAATACCCTTCTTTCTAAACCTGCAGAAAATGAATGGTATTTTGGGAAAACATTAGTGGATGTACATTTAGTTCGgtgaaaatgtttgttctaATGTACTCTGCTAATTACACAAGTATATAGCAGAAGGCTCAAGGATAAATGAGTCCCAGTATTTGGTATTTGATAAGAAACCAAATGTAGACAGATCACTTATTCTCTGAGCACTTCTCTGTAACAGCTTCCAGAATAAAAGTTGTGATGCAAAGTTTTCGGTTGTATTACATATGTAGAGAGCACTTTTttgattgtaaaatgtatttctaacaAGTCAAATTCAGCCTATTAACGGACAAATTCCTGATTTAAGAAATACCCTTTTCAGGATTTTCATCCTTTTTTGAATTGTTCCAGTAAAATAGTTTTGTCACATTACAAATGGTTTCATATCTCCTATGATATCCAGTTTTTAGAATAGAAACcctgacattttttgtttttgacatttgatgttttattttgtatatgc

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG:

id description
K10891 FANCD2; fanconi anemia group D2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22557 lncRNA upstream 21113 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 22105 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 25526 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 305034 44387443 ~ 44387949 (+) True G18127
TU22469 lncRNA upstream 315755 44376993 ~ 44377228 (+) True G18125
TU22623 lncRNA downstream 234934 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 271696 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 529384 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 812644 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 1068097 45782197 ~ 45782467 (+) True G18330
AMCG00017088 mRNA upstream 34069 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017084 mRNA upstream 215193 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017083 mRNA upstream 239489 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017082 mRNA upstream 281644 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017081 mRNA upstream 306997 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017096 mRNA downstream 1291 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017102 mRNA downstream 153814 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017097 mRNA downstream 167765 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017098 mRNA downstream 188366 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017103 mRNA downstream 218956 44933056 ~ 44934249 (+) True AMCG00017103
TU22550 other upstream 36885 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 561381 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2295196 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6189351 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10592120 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4688619 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4999424 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5837780 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5845350 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 8100153 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064305 True 4871 mRNA 0.48 44 NC_007117.7 42291345 ~ 42336987 (-)