RNA id: AMCG00017097


Basic Information

Item Value
RNA id AMCG00017097
length 2205
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00017097
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44881865 ~ 44891870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGTATTCAACCTTTCTTGAAAACATCCCCCCCTTCTCTTCCCCACCAGGTGGCCAACCTACTGAGGCTCTTCCAGATCCCCCAGATCAGCTATGCTTCCACCAGTGCCAAGCTCAGTGACAAGACTCGCTATGATTATTTTGCCCGCACCGTGCCCCCTGACTTCTACCAGGCCAAGGCCATGGCGGAGATCCTGCGCTTCTTCAACTGGACCTATGTGTCCACAGTGGCCTCAGAGGGGGACTATGGAGAGACCGGCATTGAGGCTTTCCAGCAGGAAGCCCGGGCCCGGCAGATCTGCATAGCCACCTCTGCCAAGGTGGGCCGCTCCATGAACCGCCGGAGCTATGAAGTGGTCATCAGGTCCCTGCAGCAGAAGTCCAATGCCAAAGTGGTCATCCTTTTTACACGCAGTGAAGATGCCAGGGAACTGCTGGTGGCCGCCACCCGCATGAACGTGTCTTTCATATGGGTGGCCAGCGATGGATGGGGGGCACAGGAGAGTGTGGTCAGGGGCAGTGAGCTGGTGGCCGATGGCGCCTTCACCATTGAACTGGCCTCCTATCCCATCCGAGAGTTTGCAGAATATTTCACCAAGCTGGACCCCTACACCAACACACGCAACCCATGGTTCAGAGAGTTTTGGGAGCATCGCTTTCAGTGCAGCCTCCACGACCTGAGCTGCGGCCAGCGCTCCCTCAAAGATGGCAAGTTTGAGCAGGAGTCCAAGATCATGTTTGTGGTCAACGCTGTCTATGCCATGGCCCATGCCTTGCACAACATGAGACAAGCCGTGTGCCCAAACTCCACCAAGATCTGTGATGCTATGAAGCCAGGCAATGGAAAGAGGTTTTACAGGGAGTACATCCTGAAAACCAAGTTTGATGCTCCATTCCGGCCTGCAGATACTGAAAACATTGTCCGCTTTGATGCGTATGGAGATAGTATTGGCCGCTACAATATCTTCTATTATCATAAAGTGAATGGCAAGTATATCTACAGGAAAGTTGGCTACTGGGCTCAAGGACTGATCTTGAACACCAGCCTCATTCCTTGGTCCAAACATGTAGTTCCCACATCCCAGTGCAGTGACCCTTGCAAGAAAAATGAAGTGAAAAGCATGCAACCAGGAGACGTGTGCTGTTGGATCTGCATCCCCTGCCAGCCCTATCAGTACCTGCTGGATGAATTCACATGCATGGACTGTAGCTTTGGGCGCTGGCCACTGGAGAATCTCACTGGCTGTTACAATCTGCCGGAAGAATACATCCACTGGGAAGACGCATGGGCTATCGGCCCGGTCACGATCTCCTGCCTTGGCTTCATTTGCACCCTCTTTGTGATTGGAGTTTTCATGAAGAACAATGACACCCCTATTGTGAAGGCCTCTGGAAGGGAACTGTCCTATATACTGCTGCTCGGGGTCCTGATGTGTTACAGTATGACTTTCATCTACATAGCGAAGCCATCAGCTGTCATCTGTACGCTCCGTCGCCTAGGCTTGGGGACCTCCTTTGCCGTGTGTTACTCGGCCCTCTTGACCAAAACCAACCGCATTGCACGCATCTTCAATGGCGTCAAAGACGGTGCTCAGAGGCCCCGTTTCATCAGCCCAACCTCCCAGGTGGTCATCTGCATGGCGCTCATCTCCTGCCAGCTCATCGTGGTCATCGTCTGGCTCCTGGTGGAGACGCCTGGAGTTCGCAAAGAAGTGAGCCCGGAGAAGCGGGACGTGGTGACCCTGAAGTGCAACAGCAAGGACTCAAGCATGCTCATGTCCCTGACCTACAACTGTATCCTCATCATTCTGTGCACCGTCTACGCCTTCAAGACCAGGAAGTGCCCAGAGAACTTCAACGAGGCAAAATTCATTGGTTTCACCATGTACACAACATGCATCATCTGGCTGGCTTTCCAGCCCATATTCTATGTCACTGCAAGCGACTACAGGGTCCAGACCACCACCATGTGCATCTCGGTCAGCCTGAGTGGATCGGTGGTCTTGGGTTGCCTCTTTGCTCCGAAAACACACATCATCCTGTTTCAGCCCCAGAAGAATGTGACAAGTCACCGAGTGGCCACCAACCGGTTCAGTACAACTGGCCCAGGCTCTAGCTACTCACATGCTTCAGCCTCCAACTATGTGCCAACAGTCTGCAATGGTAGAGAGGTGGTAGATTCTACTACCTCCTCCTTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04606 GRM3; metabotropic glutamate receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 167701 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 209995 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 210987 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 214408 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 493916 44387443 ~ 44387949 (+) True G18127
TU22623 lncRNA downstream 57164 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 93926 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 351614 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 634874 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 890327 45782197 ~ 45782467 (+) True G18330
AMCG00017102 mRNA upstream 5325 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017096 mRNA upstream 142064 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017090 mRNA upstream 167765 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017088 mRNA upstream 222951 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017084 mRNA upstream 404075 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017098 mRNA downstream 10596 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017103 mRNA downstream 41186 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017099 mRNA downstream 57266 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017104 mRNA downstream 328244 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017113 mRNA downstream 1051180 45943050 ~ 46096926 (+) True AMCG00017113
TU22550 other upstream 225767 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 750263 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2484078 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6378233 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10781002 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4510849 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4821654 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5660010 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5667580 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7922383 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007016 True 2781 mRNA 0.51 5 NC_007122.7 36180349 ~ 36214785 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_10504461_10536413.mRNA True 4148 mRNA 0.46 6 CI01000340 10504353 ~ 10537693 (-)