RNA id: AMCG00017102



Basic Information


Item Value
RNA id AMCG00017102
length 585
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00017102
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44867914 ~ 44876540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGGTCTCCTGTATTCTACGCCTCCTGCTTCTTCACATCCTGGTGCAGGTGGCGCTGCCCACCTCCAGTTACAACACAGGCACCAAGCGGGAGATTACTGTTGAGGGGGACCTTGTGATTGGAGGGCTCTTCCCTGTCCACGAGAAAGGAGAAGGGATGGAAGACTGTGGGAAGATAAATGAGCAGCGAGGAATCCAGCGCCTAGAGGCCATGCTTCTGGCTTTGGATGAGATCAACAATGACAGTAAGCTTTTGCCTGGCATCAAGCTTGGTGCCCACATCCTGGACACCTGCTCCAAAGACACCTACGCCCTAGAACAGTCCCTGGAGTTCGTGCGAGCCTCCCTGACCAAAGTAGATGAGACGGAGTACATTTGTCCTGATGGCTCGTATGCTGTTCATGATGACTTCCCTTTGGCTATCTCTGGGGTCATCGGTGGCTCTTACAGTGATGTGTCCATACAGaagatgaaaagaagaaaagaagaagaagaagatgaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaactaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 153750 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 196044 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 197036 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 200457 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 479965 44387443 ~ 44387949 (+) True G18127
TU22623 lncRNA downstream 72494 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 109256 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 366944 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 650204 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 905657 45782197 ~ 45782467 (+) True G18330
AMCG00017096 mRNA upstream 128113 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017090 mRNA upstream 153814 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017088 mRNA upstream 209000 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017084 mRNA upstream 390124 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017083 mRNA upstream 414420 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017097 mRNA downstream 5325 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017098 mRNA downstream 25926 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017103 mRNA downstream 56516 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017099 mRNA downstream 72596 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017104 mRNA downstream 343574 45220114 ~ 45227676 (+) True AMCG00017104
TU22550 other upstream 211816 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 736312 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2470127 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6364282 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10767051 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4526179 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4836984 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5675340 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5682910 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7937713 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile