Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00017157 |
| length | 822 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 2 |
| gene id | AMCG00017157 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 48475368 ~ 48476484 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0021854 | hypothalamus development | biological_process |
| GO:0021879 | forebrain neuron differentiation | biological_process |
| GO:0071679 | commissural neuron axon guidance | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU23215 | lncRNA | upstream | 148563 | 48322263 ~ 48326805 (+) | True | G18722 |
| TU23088 | lncRNA | upstream | 410350 | 48062399 ~ 48065018 (+) | True | G18607 |
| TU23063 | lncRNA | upstream | 620710 | 47854392 ~ 47854658 (+) | True | G18582 |
| TU23000 | lncRNA | upstream | 996112 | 47478978 ~ 47479256 (+) | True | G18538 |
| TU22914 | lncRNA | upstream | 1436845 | 47028787 ~ 47038523 (+) | True | G18470 |
| TU23309 | lncRNA | downstream | 730324 | 49206808 ~ 49211256 (+) | True | G18791 |
| TU23352 | lncRNA | downstream | 904119 | 49380603 ~ 49382195 (+) | False | AMCG00017167 |
| TU23406 | lncRNA | downstream | 959780 | 49436264 ~ 49493349 (+) | True | G18865 |
| TU23467 | lncRNA | downstream | 1105780 | 49582264 ~ 49670289 (+) | True | G18908 |
| TU23468 | lncRNA | downstream | 1196601 | 49673085 ~ 49673926 (+) | True | G18909 |
| AMCG00017155 | mRNA | upstream | 14733 | 48455495 ~ 48460635 (+) | True | AMCG00017155 |
| AMCG00017156 | mRNA | upstream | 27671 | 48361348 ~ 48447697 (+) | True | AMCG00017156 |
| AMCG00017154 | mRNA | upstream | 122622 | 48352396 ~ 48352746 (+) | True | AMCG00017154 |
| AMCG00017147 | mRNA | upstream | 259205 | 48212653 ~ 48216163 (+) | True | AMCG00017147 |
| AMCG00017144 | mRNA | upstream | 302015 | 48170296 ~ 48173353 (+) | True | AMCG00017144 |
| AMCG00017161 | mRNA | downstream | 308684 | 48785168 ~ 49023630 (+) | True | AMCG00017161 |
| AMCG00017165 | mRNA | downstream | 665115 | 49141599 ~ 49204142 (+) | True | AMCG00017165 |
| AMCG00017163 | mRNA | downstream | 735373 | 49211857 ~ 49221883 (+) | True | AMCG00017163 |
| AMCG00017164 | mRNA | downstream | 761418 | 49237902 ~ 49252687 (+) | True | AMCG00017164 |
| AMCG00017162 | mRNA | downstream | 788977 | 49265461 ~ 49278686 (+) | True | AMCG00017162 |
| TU22550 | other | upstream | 3819270 | 44654652 ~ 44656098 (+) | True | G18192 |
| TU22431 | other | upstream | 4343766 | 44126214 ~ 44131602 (+) | False | AMCG00017078 |
| TU21955 | other | upstream | 6077581 | 42391297 ~ 42397787 (+) | True | G17697 |
| TU21320 | other | upstream | 9971736 | 38496051 ~ 38503632 (+) | True | G17193 |
| TU20555 | other | upstream | 14374505 | 34100315 ~ 34100863 (+) | True | G16550 |
| TU23388 | other | downstream | 926235 | 49402719 ~ 49403634 (+) | False | AMCG00017173 |
| TU23515 | other | downstream | 1237040 | 49713524 ~ 49721471 (+) | False | AMCG00017183 |
| TU23710 | other | downstream | 2075396 | 50551880 ~ 50552985 (+) | True | G19113 |
| TU23712 | other | downstream | 2082966 | 50559450 ~ 50561788 (+) | False | G19114 |
| TU24289 | other | downstream | 4337769 | 52814253 ~ 52817098 (+) | False | AMCG00017280 |
