RNA id: AMCG00017162


Basic Information

Item Value
RNA id AMCG00017162
length 3141
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00017162
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49265461 ~ 49278686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgcaaagccTAAACCAGCACATATATGCTGAGCTGAGCGACGGAGCccctgcacagagagaaaggaggTTGACTGAAAGTGATGAAGAAAGCGAGCTGGGTCGCAGGATAGCATGCATGCTTTACATTGAATGGGTTAGCTCCTCTTTCCCCAGAGCACTTCTGATTCTCTAACAGTCCATGCTGTGCCTGTACCACAGAGGGTCCTGTGGTTTGGGGTTGGACTGCTTTGTATATGGACCTTATCTACTGGGATCAACCTATATCTTTAAGAAACTTTAGCATAGTTCAGGCTGGGATTGAGAAACACCCAGAGACAGAAAGGGGTGCATACTTTTCTTAGATTTGGTCTAAGAGCTGATAGAGTTTTTCTGTCTGTtctggtttgtgtttctttgttttagctTGTTTGGCCATGGGCACCAGTTTGGCATTTATATTACTCACTTGCTTAGGTATCATTTGGGGTTGCCAGCTTCCCCATGATTGGAGACCCCAGACTGAATCCTGCAGGGCTGAGTTGGCCGAAATCATCGTTTTTGCAAAAGTGCTGGCTCTTCACAAGGACTCTTACAGCGTGTACAACTACTTGCCCTGGCAGTACGACACGGAGCTGTTTTACTCGGCTGAAATCGAGCTGCTGTGCGACCAGGCATGGGGCAGCATGCTGGAGGTGCCCGCCGGGTCCCGGTTCAATGTCACCGGACTGGGGTACTTCCCCTGCTACTCCTACTCGGTCCTGGAGAACAACGCATACTATTTCTTCCTCAGgATGGATGAAAATTATAACATCATTCCACATGGAGTGAACTTCCAGGATCCCATTTTCCCAGACACACCAGAGAACCACCGCATGTTCGCCAGCCTCTTCCAATTCGCTAACTGCTCTACTGGGACCAATATCCACACCTACAGTCCAGACTGGGAAATCCAGGAAGATAGTAGGTTGCTCTGCTCCACGGTGCAGAAGGCCCTGTTTGAGGAGGAGGAGCGTGTGAAGACCCTCTCGCAGAAGGTGCGCTCGCTGGAGAAGGCCAACAACCATCTCAGGGACAAGGTGAAGAACATGAAACGGCTGCTGCGCCAGGCCAAGAAGGACACTAAACAGCCGACCCCATTCCTTAAACAGATGCATGACAGTGACCCGGCTGTGGACCGGGAAACCGACCCAAATCAGGACACCACACAGGACATCCAAAAGAAGCCTCTGAAGAAAGTTGTTcccaagaaactgaaaaattaacCCTGCAAGAGAGGCATGCCTGGTTACACCTTTCCCATAACAGTACTCCAAGGTCTTGATATGGACAAATGTTTGCACAAAAAAGTATCTGCAGACAACATGCTAGCTTTTGTCTGTGACAAtatgctgtgtatatatatatccttgtACCGACACACTGTACATGCATTATGAGCAGTAAGGGATTAAAAGGAACTAGGTTGAACAGATAGCTCCATTTTAGATGGGAGTGCTGGAAACCACTTAggtttaataacaataatctcaAATCACTGAGATACGCACTTCTCAAATCAGATGAGATTTGATTTACAATGATTCTCTCAATGAAAACGGTGCCATCTAGTCCCCCTAATCTTAATACATTGTGAATAGCAAAATGTGTCTGTGACTATCTCAACCCCTCCAGAAACACTATTAGctataatctctctctctccgcttaGAAATTCCACAGTACGCTTTGACAGGCCAGATATTTTATCTCAGATCCATTTCTCTCAAATGCTAgaacaaataacagaaaatcaataaaatagtTTGCTTTACTTAGATCCAAAATGAGCAGAAAGGAATTGTATTACTATTTTGGCTTGGACTTGTAGTGATTTTTCCTGCTGGCTCAGGCAAGGCTCAATTCCAAGGCAGGTTTTGAAAGATTCAGCATCTGCCTCTATAGGCCTAAGAAGATGGATGCTGGGAATATTGGTAGACTTTCTATCCCACAATACGGAATCACCAATTGATATTCAATCCCACTCACCCCTGCCCTCCCAAGTTGTTTTACGAGAAGTGTAGAGATCTGTTGCCAGGGCAATCGATTCTTTTTACACCAcaatactaaaaacaaaaacaggaccTACAATGTGTCTAGAGAAAGGACACTGATCCTGCCATTACTGCTTAGTCCCACAGCCTCTGGGTGGCTGACAGGCATTCCTTCTGTGTCGTAAGCCAAGGAGAACCCGGCCAACCCATACCTTGCCCAAGTATGGTAGCTGTCAAACAACACTGCTGTGCTATTGGACAGTCATGGTCACAGCTGGCAAGAGGTCCACTGTGGATCTGACTGGCCGTCTACAGATTGAGGGAATCTCCAGAGtatcagtgattttttttaaagcataagattttaaacaaactcaTATTTGAAATTCACATGCCACTGAAAATGCGCAAATTAGACGCGTAGATAATTCTGCCTTTAAGGCCTAATCACCATCAGAGAGTTaggtattgttttttgtatgtgatGATGTCAGGCATAGGATTGTGACTATCTGTGGAAcgtgaaaaagggcccatgtcTCTATGCAACTACTATATGCTGAAGAACTAGGTGAGCTGATTTCTTGTCTAAATGTAATTGCAGTGCATGGATTAAGATTAGTAATATACACCTCTGCATAACCACATTAAAGAGAATGCTCCTTAGAAAAATAGTAGCATATTTGTTggctgtttaattgtttaagcTTCTCTCCACACAGTTTTACAAAGCTGCAGCAAAGTAATATTTGGTTGTTGAACAGCTGAAcataacaaataacaatatgGCTTATGCCTATTATTAAAAGCTCTCATCTGTGTATTTACAGATTTGCTTTATCTTTAAGTTAAAGCCTATAGTCTATAAAACATGTTACCTTTGCTCTGACTATAAcgtttgtattgaaattaaaaatatgaatttcattttaacatgtttactGATTGTATTCTAACTatctattttttcttcaaaagcTCTTTGTAAACAAGGCAATAAACATTATCATCTTCAAATGAAAACCTATCTGAGTCAGCTAAACAGATACTCAGTGTGACTTTAAACACCAGCTGCAGAGTTTACATTTTGAACCGAATGATGTCCCTTGTGTGTTCACAATAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23309 lncRNA upstream 54205 49206808 ~ 49211256 (+) True G18791
TU23215 lncRNA upstream 938656 48322263 ~ 48326805 (+) True G18722
TU23088 lncRNA upstream 1200443 48062399 ~ 48065018 (+) True G18607
TU23063 lncRNA upstream 1410803 47854392 ~ 47854658 (+) True G18582
TU23000 lncRNA upstream 1786205 47478978 ~ 47479256 (+) True G18538
TU23352 lncRNA downstream 101917 49380603 ~ 49382195 (+) False AMCG00017167
TU23406 lncRNA downstream 157578 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 303578 49582264 ~ 49670289 (+) True G18908
TU23468 lncRNA downstream 394399 49673085 ~ 49673926 (+) True G18909
TU23626 lncRNA downstream 875672 50154358 ~ 50154694 (+) True G19040
AMCG00017164 mRNA upstream 12774 49237902 ~ 49252687 (+) True AMCG00017164
AMCG00017163 mRNA upstream 43578 49211857 ~ 49221883 (+) True AMCG00017163
AMCG00017165 mRNA upstream 61319 49141599 ~ 49204142 (+) True AMCG00017165
AMCG00017161 mRNA upstream 241831 48785168 ~ 49023630 (+) True AMCG00017161
AMCG00017157 mRNA upstream 788977 48475368 ~ 48476484 (+) True AMCG00017157
AMCG00017166 mRNA downstream 82141 49360827 ~ 49368839 (+) True AMCG00017166
AMCG00017167 mRNA downstream 93336 49372022 ~ 49382218 (+) True AMCG00017167
AMCG00017171 mRNA downstream 105925 49384611 ~ 49397912 (+) True AMCG00017171
AMCG00017173 mRNA downstream 123845 49402531 ~ 49403845 (+) True AMCG00017173
AMCG00017172 mRNA downstream 125541 49404227 ~ 49415962 (+) True AMCG00017172
TU22550 other upstream 4609363 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5133859 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 6867674 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 10761829 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 15164598 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 124033 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 434838 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 1273194 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 1280764 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3535567 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007407 True 2568 mRNA 0.40 3 NC_007122.7 4148808 ~ 4175773 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_02807951_02821617.mRNA True 1240 mRNA 0.48 4 CI01000057 2807766 ~ 2821793 (-)