RNA id: AMCG00017193


Basic Information

Item Value
RNA id AMCG00017193
length 2160
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00017193
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50045218 ~ 50061365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCCGATAAAGATGGTGGTCTTCCACGACAAGTGGGAAACAAGACCGAGTGTGGCTTACTCGGGTTCGTCCTAGACCTGAAGCGTGACTACCAACCTGTCCGCAAGAAGATCCCAGAAGAGAACCTCTACAAAGTGTACACCTTCAACTCGGTCAGGAAGTCCATGAGCACAGTTATTAAACAACCCGATGGCAGCTTCACCCTGTACAGCAAGGGGGCCTCCGAGATCGTGCTTAAAAAATGCTCCCGTATCCTCAATGCAGCCGGAGAAACACGTATTTTTAGGCCTCGGGATCGTGATGAAATAATTAAGAAGGTGATTGAACCGATGGCTTCTGACGGACTAAGGACCATCTGCATTGCTTATCGTGATTTCCCCGGAAACCCGGAACCACAGTGGgataatgaaaatgacatcGTAGCGGATCTGACTGCAATATGTGTTGTTGGCATAGAGGACCCAGTCAGGCCTGAGGTTCCAGATGCCATCAGAAAGTGTCAGCGTGCGGGGATCACAGTTCGCATGGTCACTGGTGATAATATCAACACTGCGCGTGCTATTGCTATTAAATGCGGTATTATTCACCCGGGGGAGGACTTCTTATGCATAGATGGAAAGGAGTTCAACAGAAGGATTCGCAATGAAAAAGGAGAGATTGAACAAGAACGAATTGATAAGATCTGGCCGAAGCTTCGAGTGCTTGCAAGATCCTCACCTACTGATAAACACACCTTGGTAAAAGGTATTATTGACAGCACATTGGTGGAGCAAAGGCAAGTGGTCGCTGTAACTGGGGATGGGACTAATGACGGACCTGCGTTAAAGAAAGCAGATGTTGGCTTTGCAATGGGAATTGCTGGTACTGATGTGGCAAAGGAGGCCTCTGACATCATTTTGACTGATGACAACTTCTCCAGCATTGTGAAGGCGGTGATGTGGGGCCGCAATGTGTATGACAGCATCTCCAAGTTTCTGCAGTTCCAGCTGACAGTGAATGTCGTGGCTGTGATTGTTGCCTTCACCGGGGCTTGCATCACGCAGGATTCCCCACTGAAGGCTGTGCAGATGCTGTGGGTCAATCTCATCATGGACACCTTTGCATCTTTGGCTCTGGCCACAGAACCACCAACAGAATCCCTGTTAATGAGGAAGCCCTATGGCAGGAACAAGCCACTGATTTCACGCACAATGATGAAGAACATTCTTGGCCATGGCGTCTACCAGCTTACCATCATTTTCACCCTGCTCTTTGTGGGTGAGAGTATTTTCAACATCGACAGCGGCAGGAATGCACCGCTGCACTCGCCTCCATCTGAACACTACACCATCATCTTCAACACCTTCGTCATGATGCAGCTCTTCAACGAGATCAATGCTCGTAAGATCCACGGAGAACGAAACGTTTTCGATGGGATCTTCAGGAACCCAATATTCTGCTCAATTGTAGTGGGGACATTTGCCATCCAGATAGTCATCGTGCAGTTTGGTGGTAAGCCATTCAGCTGCTCTCCTCTGGACATTGACAAGTGGATGTGGTGTGTATTTCTTGGATTGGGAGAACTCTTGTGGGGACAGGTAATATCAACAATTCCAACAAGCAGGCTGAAATTCCTTAAAGAAGCAGGCCAACTCACACATAAAGATGAGATGCCCGAAGAAGAGATGAACGAGGACAACGAGGAAATTGACCACGCCGAGAGAGAATTGCGTCGTGGGCAGATCCTGTGGTTCCGGGGCCTTAACCGGATTCAGACTCAAATTGAAGTAGTGAATACATTCAAGAGTGGCACTTCATTTCAGGGAGCGCTGAGGCGGCAGTCCTCCACCACCAGCCAGCACCAGGATATACGCGTCGTGAAGGCATTCCGTAGCTCTCTCTACGAGGGTCTGGAAAAACCTGAATCGAGAACCTCCATTCACAACTTCATGACTCACCCCGAGTTTAGAATAGAAGACTCCCAGCCCCACATCCCTCTGATAGACGATACTGACATCGAAGAGGACGCGGCGCTCAAGCAGAACTCCAGCCAGCCCTCCTCAcccaacaagaacaacaatgcGATCGATAGTGGAATTAATCTCACCACCGACACCAGTAAATCAGCTACCTCTTCAAGTCCTGGGAGTCCACTACACAGCCTGGAGACTTCGCTTTAG

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 371292 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 374929 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 551869 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 663023 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 833962 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 92993 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 94088 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 271101 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 272395 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 280052 50341417 ~ 50342150 (+) True G19061
AMCG00017194 mRNA upstream 13836 50011932 ~ 50031382 (+) True AMCG00017194
AMCG00017195 mRNA upstream 47767 49993362 ~ 49997451 (+) True AMCG00017195
AMCG00017192 mRNA upstream 139637 49851298 ~ 49905581 (+) True AMCG00017192
AMCG00017190 mRNA upstream 214139 49821733 ~ 49831079 (+) True AMCG00017190
AMCG00017189 mRNA upstream 233251 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017196 mRNA downstream 117090 50178455 ~ 50190780 (+) True AMCG00017196
AMCG00017197 mRNA downstream 204294 50265659 ~ 50267149 (+) True AMCG00017197
AMCG00017198 mRNA downstream 209866 50271231 ~ 50303625 (+) True AMCG00017198
AMCG00017204 mRNA downstream 341954 50403319 ~ 50403624 (+) True AMCG00017204
AMCG00017201 mRNA downstream 380182 50441547 ~ 50445797 (+) True AMCG00017201
TU23515 other upstream 323747 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 641584 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5389120 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5913616 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7647431 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 490515 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 498085 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 2752888 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2759696 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3274544 53335909 ~ 53339655 (+) True G19683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05119106_05161147.mRNA True 4672 mRNA 0.48 21 CI01000057 5118994 ~ 5162116 (+)