RNA id: AMCG00017225


Basic Information

Item Value
RNA id AMCG00017225
length 484
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00017225
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50960833 ~ 50972601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACACAGAACGGAGCTTTACACCGAAGTCCCGTCCACATGTATGCCGATTGTCTACTCTCCAGATTACAACATTACTTTTATGGGATTAGAGAAACTCCATCCGTTTGATGCAGGGAAATGGGGGaaagtcattcattttttaagagAAGAACAGCTGATCACAGATGGCAATATCGTTGAAGCCAGGGAGGCCACTGAGGAGGACCTGCTCGTTGTCCACACGAGACGCTATCTGAACAAACTCAAGTGGTCGATCGTGGTGGCCACCATCACCGAAATCCCCCCTCTTCTCTTCCTGCCCAACTTCCTCGTCCAGAGAAAAGTCCTCCGACCTCTGAGGACGCAGACCGGCGGAACAATCATGGCAGGCAAGCTGGCTATTGACAGAGGATGGGCAATAAATGTTGGAGGAGGCTTCCATCATTGCTCCAGTGATAAGGGTGGTGGGTTTTGTGCCTATGCTGATATTACATTAGCTATC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11418 HDAC11; histone deacetylase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23810 lncRNA upstream 232682 50727740 ~ 50728151 (+) True G19195
TU23759 lncRNA upstream 320031 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 329199 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 397555 50559450 ~ 50563278 (+) True G19114
TU23651 lncRNA upstream 608886 50351252 ~ 50351947 (+) True G19062
TU23870 lncRNA downstream 164692 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 323231 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 367312 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 592688 51565289 ~ 51571994 (+) True G19366
TU24151 lncRNA downstream 1134347 52106948 ~ 52116341 (+) True G19465
AMCG00017217 mRNA upstream 249341 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017209 mRNA upstream 288648 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017211 mRNA upstream 308248 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017210 mRNA upstream 321865 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017212 mRNA upstream 338886 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017224 mRNA downstream 12658 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017227 mRNA downstream 76020 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017226 mRNA downstream 187318 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017229 mRNA downstream 197012 51169613 ~ 51176459 (+) True AMCG00017229
AMCG00017231 mRNA downstream 239578 51212179 ~ 51212391 (+) True AMCG00017231
TU23712 other upstream 399045 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 407848 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1239362 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1557199 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6304735 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1841652 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1848460 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2363308 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2530831 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2817946 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006857 True 1122 mRNA 0.49 10 NC_007122.7 27134116 ~ 27197381 (+)