RNA id: AMCG00017229



Basic Information


Item Value
RNA id AMCG00017229
length 816
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00017229
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51169613 ~ 51176459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCAGTGCATCGTGTTTTATCTTTCCTGTGACAATTAGCAAGCTCTGCAAGGCCAAGGTCTCCCACTCACATGAACTTGGTAGTGGAAGTGACGGGGGTTGGACATACGGACAGCGGcttcagccaatcagagagcgCACAACGGTCCGGGTTAACCAACCAGAAGAAGAAGGGGGCGGGATTTGGAGCATCAAGCAACTGAAAGACTTCAAGGATGATCTCAATTCAACCTCCAAAGAAGTTAAAGCCTTGATTAACAGCCTGGGCCACAGCATGATAAAGGAGATACAACTGAAAGTATCTGTCCTGAAGAAGATGGTGGACATCGAGTGCGATTTGAAGGTTGGTGATCTGAACAACACTCTGCGTGAACTAGAGGAGCCGCAGCAGCTCTTCCTGAAAATGCAGAAACTgctgcaaacacacagcagccctGCTGAGTTTCTGGAGGAATGCACACACCTCAGTGACGAGGCCGAGAACCGCGTTCAAGACGACATCGTGCCACCGCCGCTGAAGAAGGAAAGCATCTCCATTGGGATGTATGTAGAGATGCTGCTGACAAGTGTGAAAATTAAGAAAGTATCCAAGTCAGGCCCAAGTAGCATTCTTGGGAGACTCTCTGAGGAATACAATGCATGGAGATTAGGCTGTTCAAACGTTGACCTAACCTCCTATGATGGCCTGGATCAGCTGATACGTGATTCTGTGTCATTTGCATCACTCTATCCCGACTCAGCCAGTAGCATAAGCTCGTCCGAGGAGAGCAGCACGGATGGAGACATGGAGGAAAGGCTTCAGCactttttctga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23870 lncRNA upstream 30778 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 441462 50727740 ~ 50728151 (+) True G19195
TU23759 lncRNA upstream 528811 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 537979 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 606335 50559450 ~ 50563278 (+) True G19114
TU23904 lncRNA downstream 119373 51295832 ~ 51296718 (+) True G19275
TU23921 lncRNA downstream 163454 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 388830 51565289 ~ 51571994 (+) True G19366
TU24151 lncRNA downstream 930489 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 1371290 52547749 ~ 52548031 (+) True G19515
AMCG00017226 mRNA upstream 4365 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017227 mRNA upstream 101288 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017224 mRNA upstream 179760 50985259 ~ 50989853 (+) True AMCG00017224
AMCG00017225 mRNA upstream 197012 50960833 ~ 50972601 (+) True AMCG00017225
AMCG00017217 mRNA upstream 458121 50696846 ~ 50711492 (+) True AMCG00017217
AMCG00017231 mRNA downstream 35720 51212179 ~ 51212391 (+) True AMCG00017231
AMCG00017230 mRNA downstream 37800 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017243 mRNA downstream 463178 51639637 ~ 51640615 (+) True AMCG00017243
AMCG00017238 mRNA downstream 470945 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017237 mRNA downstream 477071 51653530 ~ 51663841 (+) True AMCG00017237
TU23712 other upstream 607825 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 616628 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1448142 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1765979 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6513515 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1637794 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1644602 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2159450 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2326973 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2614088 53790547 ~ 53792694 (+) True G19829

Expression Profile