RNA id: AMCG00017252


Basic Information

Item Value
RNA id AMCG00017252
length 1146
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00017252
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51948217 ~ 51985368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTTACCTGCTCTGAAtacGAATACTTCAATGCCGTGTTAATTAATGAAGTAGATGAAGAAGGGAATAACGTGGAGCTCGGGAAGGAGTTCATGTTGGAGCCAAAtgaccattttaataatttgtcgGTCAACCTTAGCCTCAGTGTCGTTCAAGTACCAACCAACATGTACAATAAAGATCCTGCGATTGTGAACGGGGTCTACTGGTCCGAGGCATTAAATAAAGTATTCGTAGATAACTTTGAACGTGACCCATCCCTAATATGGCAATACTTCGGCAGCGCCAAAGGATTCTTCCGGCAGTACCCGGGTATAAAATGGAAACCCGACGAACATGGGGTCATCGCCTTTGACTGCAGGAATCGAAAATGgtaTATTCAGGCAGCTACTTCACCGAAAGACGTGGTGATTCTGGTGGATGTCAGCGGGAGTATGAAAGGCCTTCGTCTCACCATCGCTCGGCAGACGGTGTCTTCAATTCTGGACACACTTGGAGATGATgattttttcaatataattgCTGTGAGTATTATTCCcATTGCCATCAAAGAAAAGTATTTCGCTGTGAAGGAGTCTGAGCTCTCCCTCGGCAAATACAACGAAGAGCTGCACTACGTTGAGCCGTGCCTGAACGGGACGTTGGTCCAAGCTGACATCACCAACAAGGATCATTTCCGAGAGCATCTGGACAAACTCTTTGCAAAAGGAATCGGGATGTTGGACAACGCTTTGGATGAAGCCTTTAAACTCCTTAATGAAtacaATCAAACGGGCAGAGGAAGCATTTGCAGTCAGGCCATTATGTTGGTCACGGATGGCGCCGTGGACACGTATGATGCTGTGTTTGCAAAATACAACTGGCCGGACAGGAAGGTCCGCATATTCCCCTACCTGATTGGACGCGAATCTGCATTTGCTGATAACCTGAAGTGGATGGCGTGTGCCAATAAAGGGTACTTCACACAGATCTCCACGTTAGCAGACGTTCAGGAGAACGTAATGGAGTATCTTCACGTGCTAAGCCGGCCAAAAGTCATAGACCAGGAGCACGACACCATCTGGACCGAGGCCTACATAGACAGCACCGTGAGTGTCCAGATTTACTCTCTGACAGCAGTAGTGTGGTGCACCTCATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24023 lncRNA upstream 376223 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 608100 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 651499 51295832 ~ 51296718 (+) True G19275
TU23870 lncRNA upstream 809382 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 1220066 50727740 ~ 50728151 (+) True G19195
TU24151 lncRNA downstream 121580 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 562381 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 811564 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 865563 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 872785 52858153 ~ 52863723 (+) True G19617
AMCG00017247 mRNA upstream 103363 51838583 ~ 51844854 (+) True AMCG00017247
AMCG00017248 mRNA upstream 120442 51757725 ~ 51827775 (+) True AMCG00017248
AMCG00017246 mRNA upstream 222689 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017237 mRNA upstream 284376 51653530 ~ 51663841 (+) True AMCG00017237
AMCG00017238 mRNA upstream 298699 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017253 mRNA downstream 19852 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017267 mRNA downstream 398652 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017275 mRNA downstream 755795 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017279 mRNA downstream 772095 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017280 mRNA downstream 829094 52814462 ~ 52817369 (+) True AMCG00017280
TU23712 other upstream 1386429 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 1395232 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 2226746 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 2544583 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 7292119 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 828885 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 835693 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 1350541 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 1518064 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 1805179 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008165 True 3069 mRNA 0.47 35 NC_007122.7 36691801 ~ 36765376 (-)