RNA id: AMCG00017275


Basic Information

Item Value
RNA id AMCG00017275
length 1443
RNA type mRNA
GC content 0.68
exon number 3
gene id AMCG00017275
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52741163 ~ 52743891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCAAAAGAGCGGGGGCCCCTGAGAGCCCTCCTCCTGCTGACCCTGGGGGGGGTCCTTCGCTCCCTGGTGGGAGGTCTGCAGCCCGCGCACCCCCCCCTGCTGCCCGGACAGCCCTTCCTGATGCTCTGGGGGATCCCTGACACCCTGTGCGAGGGTCGCCCGGACCCCAGCGCCTTCGGCATGGTGGTGAAGGGGGGGGGCGCCACACAGAAGTTTGCCATTTTCTACCCAGACACTCTGGGGCTGTACCCCTACTACGACCTCCAGGACCAGCCCGTGGCAGGGGGGCTGCCCCAGCACAGCAGCCTGGACATGCACCTGCTGAAGATCGAGGCCGACGTGACGGCCGCCCTGCCCCCCCCGGACTACGCTGGCCTGGCCGCCATCCACTGGGAGGAGTGGGCGCCGCAGTGGAGCCGGAACCGCGGCAAGAGGGAGATCTACCAGCAGCAGTCGCGCCAGCTGCTTCGGCAGTTCTTCCCCGACTGGACACCCGCCGAGCTGGACAAGTGGGCACAGGTGGACTTCGAGGCTGCCGCCCAGGCCGTGCTGCTGGAGACGCTGCAGGAAGCCCGCAACCTGCGGCCACAAGCCCTCTGGGGCTTCTCTCCATACCCCGACTGCTACAACTCCGGCCCTGGACAGCGCCTGGCCAACTACAGTGGCTGCTGCCCGGCGGCGGAGATGGCGCTGAACGATGAGATGCTGTGGCTATGGAAGAAGTCGGCGGCACTGTACCCCTCCCTGTCACTGGACAAGCTGGTGGGTGGCACCCAGGGGGCGCGTCTCTACTCCTCCAATCAGATCCGAGAAGCGCTACGAGTGGCAGCCCTGGCTGGGACCGCCTACGACCTCCCCGTTTTCCCATTGGTCAAGAGCGTCTACTCCTCCACCAACACCTTCCTGTCCGAGCTGGCAGACTTTGTGCGGGGGGTGCTGGGCCCATACGCGGTGAACGTGACAGTGGCGGCACAGCTGTGCGCAGAGGGGCTGTGCCGGGGGCGTGGCCGGTGCGTGCGCAAGAACCCCGAGGAGCCCGCCTACCTGCACCTGCCTGCGGGCAGCTTCCGGCTCTCGCCCGACCCCAACGGCACCCAGGACAGCCTGCTGGCGCTGGGCGAGCTGCAGCACGGCGACCTGGAGGCCTGGCGCCGCCAATTCCACTGCCAGTGGTACGAGGCCCTGGAGGGCACGGCTGCTGACCAGGTGTCtgtggggtcaggggtcagcagGAAATCTGAGAAGAAGCCCCTGCTGACAGAGAGCCCTATGCTGACCGGGAGCCCCACCCTGATCTTGAGCCCCACCCTGACCTCAAGCCCCACACTGACCGGGAGCCCCACGCTGAACCACGGCGCCCCCTGTCTGCTCTGCGGCAggcccctgctgctgctgctcgggGTCCTGGCCTGCCTACCCGCCTGCGGACTAAGCTGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24211 lncRNA upstream 193132 52547749 ~ 52548031 (+) True G19515
TU24151 lncRNA upstream 624822 52106948 ~ 52116341 (+) True G19465
TU24023 lncRNA upstream 1169169 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 1401046 51339913 ~ 51340117 (+) True G19292
TU23904 lncRNA upstream 1444445 51295832 ~ 51296718 (+) True G19275
TU24295 lncRNA downstream 53041 52796932 ~ 52802211 (+) True G19588
TU24301 lncRNA downstream 107040 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 114262 52858153 ~ 52863723 (+) True G19617
TU24364 lncRNA downstream 189873 52933764 ~ 52935403 (+) True G19641
TU24365 lncRNA downstream 189873 52933764 ~ 52934977 (+) False G19641
AMCG00017267 mRNA upstream 327252 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017253 mRNA upstream 726008 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017252 mRNA upstream 755795 51948217 ~ 51985368 (+) True AMCG00017252
AMCG00017247 mRNA upstream 896309 51838583 ~ 51844854 (+) True AMCG00017247
AMCG00017248 mRNA upstream 913388 51757725 ~ 51827775 (+) True AMCG00017248
AMCG00017279 mRNA downstream 13572 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017280 mRNA downstream 70571 52814462 ~ 52817369 (+) True AMCG00017280
AMCG00017287 mRNA downstream 77315 52821206 ~ 52822263 (+) False AMCG00017287
AMCG00017288 mRNA downstream 174161 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017290 mRNA downstream 186599 52930490 ~ 52933688 (+) True AMCG00017290
TU23712 other upstream 2179375 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2188178 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3019692 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 3337529 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 8085065 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 70362 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 77170 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 592018 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 759541 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 1046656 53790547 ~ 53792694 (+) True G19829

Expression Profile