RNA id: AMCG00017287


Basic Information

Item Value
RNA id AMCG00017287
length 387
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00017287
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52821061 ~ 52834042 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCGGCACAGTGGGCGCGGGAGCTGTTCGGTGTGGCTGTGAAGGCCGTGCAGCCGGATAGCGTGCTGAGCTCCAGCCTGACCCTGCAGGGGGGACGCCTCCTGGTAGGGGGGCAGAGCTTCGCCATCGACCACAACCTGTACCTGGTGGGCTTCGGCAAGGCGGTGCTGGGCATGGCGGCGGCAGCTGAAAGGGTGGTGGGGGGTCACCTGGTGCGCGGCGTGGGGGCGATGCACAACCTGCCCGACAGCGCGGCACAGCAGGCGGCCCAGGACATCCAGAAGCTGGCCAGCGGACTGGGGGAGGGGGACCTGCTGCTGGCGCTGGTCTCGGGTATGAGCCGCCTCCCCACCTCACCACACACTAGCCTTGTGAACTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24295 lncRNA upstream 18995 52796932 ~ 52802211 (+) True G19588
TU24211 lncRNA upstream 273175 52547749 ~ 52548031 (+) True G19515
TU24151 lncRNA upstream 704865 52106948 ~ 52116341 (+) True G19465
TU24023 lncRNA upstream 1249212 51565289 ~ 51571994 (+) True G19366
TU23921 lncRNA upstream 1481089 51339913 ~ 51340117 (+) True G19292
TU24301 lncRNA downstream 28668 52850931 ~ 52854722 (+) True G19591
TU24335 lncRNA downstream 35890 52858153 ~ 52863723 (+) True G19617
TU24364 lncRNA downstream 111501 52933764 ~ 52935403 (+) True G19641
TU24365 lncRNA downstream 111501 52933764 ~ 52934977 (+) False G19641
TU24386 lncRNA downstream 184897 53007160 ~ 53007531 (+) True G19660
AMCG00017280 mRNA upstream 3837 52814462 ~ 52817369 (+) True AMCG00017280
AMCG00017279 mRNA upstream 60702 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017275 mRNA upstream 77315 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017267 mRNA upstream 407295 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017253 mRNA upstream 806051 52005220 ~ 52015155 (+) True AMCG00017253
AMCG00017288 mRNA downstream 95789 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017290 mRNA downstream 108227 52930490 ~ 52933688 (+) True AMCG00017290
AMCG00017289 mRNA downstream 114637 52936900 ~ 52951955 (+) True AMCG00017289
AMCG00017297 mRNA downstream 432404 53254667 ~ 53275017 (+) True AMCG00017297
AMCG00017301 mRNA downstream 464166 53286429 ~ 53302089 (+) True AMCG00017301
TU24289 other upstream 4108 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2259418 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2268221 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3099735 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 3417572 49402719 ~ 49403634 (+) False AMCG00017173
TU24421 other downstream 513646 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 681169 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 968284 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 972363 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 1031644 53853907 ~ 53855839 (+) True G19854

Expression Profile