RNA id: AMCG00017304


Basic Information

Item Value
RNA id AMCG00017304
length 3214
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00017304
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53398855 ~ 53408838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTGCACTGAGGGCGGATTTCGGGTCCGGAGTTCAGAGCCGCTCAGGAGTTCGTCCGACGCCGCGACACAGACATGCTGCTGCGGGCGATCGCGGGGGGCCGGGCCGGCCTCGGGGTCCGAGTCCCGACGGGGATCCTGCGGCTTGTGGCGCCGACAGTGAGGCAGGAGCGGCGGAGCAGCGCGGAGGGCGCGGTGAAGAGGACGGAGCTCTACGAGTTCCACCGGGCGCAGGGCGGGCGGATGGTGGAGTTCGCTGGGTGGAGCATGCCGGTGCAGTACCGCGACAGCCACATCGCCTCGCACCTGCACACCCGGCAGCACTGCTCCATGTTCGATGTCAGCCACATGCTGCAGACCAAGATCCATGGCAAGGACAGAGTGCGGTTCATGGAGTCTCTGATCGGCACCTTGTCTCTCTTCACCAACGAGAAGGGGGGGATCATAGATGACCTGATCGTGACCAAGACGGACCAGGGCTACCTGTACGTGGTGTCCAATGCCGGCTGCTCGGAGAAGGACTCAGCCCACATGCAGGACCGGCTGAAGGAATTTCAGTCCGCGGGTCACGACGCCTCGCTGGAGTTTCTGGACGAGAGTCTGATCGCGCTGCAGGGTCCCTCCATGTCTCGGGTCCTTCAGCCAGGGTTGTCTGATGACCTGAGCAAGCTGACCTTCATGACCAGCGTCGTGACCACCGTGCTGGCGGGGCTGGGGGCGAGGGACAGTCTGCGGCTGGAGGCGGGGCTCTGTCTGTACGGCAGCGACATCGACGAGACCACCACCCCCGTGGAGGCCAGCCTGGTGTGGACTATAGGGAAGCGGCGGCGCGCGGCGATGGACTTCCCCGGGGCAGCGGTGGTGGTGCCACAGATCAAGGCCAAGCCGCGGAGGAGGCGGGTGGGGCTGCTGTCCACAGGCCCCCCCGTCCGCCAGCACACCCCCATCCTGAGCCCTGATGGCCAGGTCATCGgggAGGTGACCAGCGGCTGCCCCTCACCCTGCCTGAAACAGAACATTGCCATGGGGTATGTGGAGGCGGCATTCAGCAAGGTGGGCACCGCGGTGCGCGTGGAGGTGAGGAAGAGGCCGGTGGACGCCGTGGTCAGCCGCATGCCCTTTGTGTCCACTCACTACTACACCGGCCAGGGGAATTGACCCCTGACCTCTGGCCCTTGACCCCTGACCCCGGCCCACTGACTCCACCCCCAGTGCCTTCCCCCCCACTTCAGCCCTGACGCCTGGCGGAGTGTGTTATTGACTGGTGTGCCAACAGAGGGCAGTCATGGCTGGGGTCCTGAGGACAGGCACGTTTACAACAGTCTAACCTAATACTGATCATTCTGTTTGTCTTCTTTTCTATatttgctttcaaaatatatcATTTACGTATCAGAACTTGGTCCAAATTtgccaaaacagaaacaaactacTTCATGTTGTAGAAACCAGGacgtgtttgttttgttaaccaCTACCTAGTAATCGGGCATCCTTACAGCCGTGGCCCCAGCCTCTTTATGTGGAAgatctaagaaataaataatcagatcTACCTGATGTTTGCCCAAAGGCTTGCGCTCTACACTGCCGTGTTGTCGAGGGCGGGGGGATTGGTGCGTATCGGTTACACGTCCTGGGAGATCACGGTTGACAGGTTGGGGCCACTGCCTTCCAGGATTGTGACCTGACTGTAATTGTTGAATTGTCTGGCGTGGTTTTGCATTCCCTTCCTGGTCTGTTGTGCGTTACCCACAGAGACGGCTGATCAGTGGAGAAGCTTCAGCTCAGTGTCTCCAGAAACCCTTTTACTGGTGTTAATTACCAACCGCCCCCTACTGATAACATTATCAATTACAGCAACACACCTGTCTGCCTTGAATTCACTCGATCATCTCCTGCCAAAAAAGAGCCGAAACTAAAGCAGGTTCAtagatttctgtttgtttgtttcttacttTCAATCTAGATTAATTGATCTGACTAACGTGACTAAACGTGTTCGAAATCAATAACGGAGAGATGCGCTGTGGAACTGTGACGAGTTATTctgatatgtatttttatagattttctgGTGTCGACCGTGTTACAGCTGTAAACGCAATTTGTGTTGTGTGCAAACCCTTAACCAGGTTATAAAGATTCTTCCTGGGGCCAGGGAAGTAAAATCGGACAGTGAAACAAAGTCCTTGCCGTTCTGTAGAAACCGCGTGGATTAGTGTGACTCACTGACCTGCCCTGTGCAGCGATTCATGTACAGTAGCGCCGAACCGCATGAAACATGACTCAGGGCGTCCCTGCTCTTCATTGTTCGCCGTAAACCCAGCTCTTTTGTGTTTCGGTTGCAGACGGGACTGTGCGCTTGCAGATCCTGTTCTCCTGCAATTGCCAGCGAGGCTGCTGACGCATTGTAGTTTAAGAGTCGATTGTTTCTGTGCAGGTGCTCGCGATTGCCCTCAACCTCCGATTAAAGGGGACTTTACCAAGTGTGAATCCTATAGcaatttttcacttttataatgatttactgaataaaaaaaaaaatacagcaccACACCTTTCGCACTTTACTCTTAACTGATCCTATTTTTCCCCAATGAGTTTGCTTTGCTGCCAGTTAACTTCGGTAGAACTGTgttgtcattttcctttttacgaaaacaaacaagctaTCCTGTGTAAGCGGTACACGGTGCTCTCTGGACGCGGTCTGGCTTTCACTCAGGATCGATAGAAAACCCTGGCTGCTGTCAGATAACCTTCAGTCGTGTCGTCCCTGTCAGGGGATCTGCTGACGTGAAAGCCGATCTGATCGTGTCTTACGAAGAAATCGAGAGAAGAATGCAAGTGAGGGCAATGATGAGGGCCGGGGAGGTTGTGGATGATAAAGAGTGAGATGCCACTGGACAGGAGCGCTGTGTCCAGTAATAAAGTGAGTCCCCCATGTCAGGAAATCCATTAATTTCCACTGTGGCTATGAGCTCGTCTCGACAGCAACAAACCGGTTGAACAGGCGTTGTGAcatcattgtgttttgtgtgactGAAATGGTGTAAGGTCCTGAACTGATCCTATCTCTGTATCCTACCTACATtgagtttattttctgtgtttctaacatgttgttttttaatctaataAAGACAACATTTTTAGAAGTGGTTATGGTTTTGGttttacttttgaaataaaaGCCATTCATTTAATCAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00605 gcvT, AMT; aminomethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24417 lncRNA upstream 63471 53306095 ~ 53335384 (+) True G19679
TU24404 lncRNA upstream 77917 53276881 ~ 53320938 (+) True G19674
TU24405 lncRNA upstream 115649 53239106 ~ 53283206 (+) True G19675
TU24390 lncRNA upstream 373921 53024625 ~ 53024934 (+) True G19664
TU24386 lncRNA upstream 391324 53007160 ~ 53007531 (+) True G19660
TU24475 lncRNA downstream 127 53408965 ~ 53409300 (+) True G19729
TU24503 lncRNA downstream 43292 53452130 ~ 53533874 (+) False G19751
TU24505 lncRNA downstream 43426 53452264 ~ 53527622 (+) True G19751
TU24506 lncRNA downstream 117911 53526749 ~ 53533874 (+) False G19751
TU24508 lncRNA downstream 117911 53526749 ~ 53527622 (+) False G19751
AMCG00017308 mRNA upstream 6263 53388384 ~ 53392592 (+) True AMCG00017308
AMCG00017307 mRNA upstream 11142 53380895 ~ 53387713 (+) True AMCG00017307
AMCG00017303 mRNA upstream 18813 53374884 ~ 53380042 (+) True AMCG00017303
AMCG00017300 mRNA upstream 35558 53356581 ~ 53363297 (+) True AMCG00017300
AMCG00017301 mRNA upstream 96766 53286429 ~ 53302089 (+) True AMCG00017301
AMCG00017306 mRNA downstream 542 53409380 ~ 53419134 (+) True AMCG00017306
AMCG00017305 mRNA downstream 10702 53419540 ~ 53429061 (+) True AMCG00017305
AMCG00017311 mRNA downstream 72000 53480838 ~ 53507197 (+) True AMCG00017311
AMCG00017314 mRNA downstream 250660 53659498 ~ 53669772 (+) True AMCG00017314
AMCG00017319 mRNA downstream 266040 53674878 ~ 53689906 (+) True AMCG00017319
TU24421 other upstream 59200 53335909 ~ 53339655 (+) True G19683
TU24309 other upstream 564813 52821061 ~ 52834042 (+) True AMCG00017287
TU24289 other upstream 581757 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2837067 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2845870 50551880 ~ 50552985 (+) True G19113
TU24512 other downstream 94594 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 381709 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 385788 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 445069 53853907 ~ 53855839 (+) True G19854
TU24638 other downstream 455270 53864108 ~ 53864718 (+) True G19860

Expression Profile