RNA id: AMCG00017335


Basic Information

Item Value
RNA id AMCG00017335
length 2131
RNA type mRNA
GC content 0.62
exon number 17
gene id AMCG00017335
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54013561 ~ 54033037 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCGGGGGGCCCGCGGCTCGTTGCAAACAGCGCTGCGCAGCTCTGCCTGTGGTTTTCCTGCTGTGTGGATTTAATCGTTAACTCGGCAGCGCTGTGTCCAGCCCGGCGCTCTGTGTTCCAGGCGTCGGGTCAGGAGCCGGAGGTCAGATCATCATGGCTCCCTTCCTGAGAATCGCCTTCAATGCGTTTGACCTGGGCACCCTGCCCCCGCTGGCCGAGGCGCCCTTCTGTGCCATCAAACTGAAGGAGTCCCTGACcacagAGCGAGGCAAGACGCTGGTGCAGAAGAAGCCCACCATGTACCCGGCCTGGAAGTCCAGCTTTGATGCTCACATCTACGAGGGTCGCGTGCTGCAGGTGATGTTGATGCGCACGGCCGAGGAGGCGCTGTCCGAGGTCACAGTGGGCGTGTCCGTGCTGGCCGAGCGCTGCAAGAAGGCCAACGGCAGGGCGGAGTTCTGGGTGGACCTGCAGCCCAGCGGCAAGGTGATGATGTCGGTGCAGTACTTCCTGGAGGACAGTGACGGAGGTGAGGCAGAGCGGGGCCGGGGGGTGGGTGTGGTGTTCTGGGGGGGGGGCGTGTACCCAGAGGACGCGCTGCCCGACGTGTTTCTGCCACTGTGCCGCGCGCTGTCGGCCTGCAGAGACACCGGCCCACCTCTCCCTGCTCTCCCTCTGCTGCGCGCTGCCAGCTCACACCCTCTCTTCGAAGTGGACACGAAGCAGTCGATGAGGGAGGAGGATGCAGCCGTGACGCTGACGCGGCGGCGCGGCGCCATCAAACAGGCCAAGGTACACTGCATCAAGAACCACGAGTTCATCGCCACCTTCTTCCACCAGCCGACCTTCTGCTCCGTGTGCCGCGAGTTCTTCCAGAAGGAGCGCTTCAAGATCGACATGCCGCACCGCTTCAAGACGCACAACTACATGAGCCCCACCTTCTGTGACCACTGCGGCAGCCTGCTGTGGGGCCTGGTGAAGCAGGGCCTGAAGTGCGAGGACTGCCAGATGAATGTCCACCACAAGTGCCAGACCAAAGTGGCCAACCTCACCCCCCGCACCCCCGCACCCCCGTCCCACCTGCCTCGCCTCACCTTCGATCACTTCGTCTTCCACAAGGTGCTGGGCAAGGGCAGCTTTGGCAAGgTGCTGCTGGCCGAGCTGCGGGGGAAGGGTCAGTTCTTCGCGGTCAAGGCCCTGAAGAAGGACGTGGTCCTGATGGACGATGACGTGGAGTGCACCATGGTGGAGAAGCGGGTCCTGGCGCTGGCCTGGGACAACCCCTTCCTCACGCACCTCTACTCTACCTTTCAGTCCAAGGAGCACCTGTTCTTTGTGATGGAGTACCTGAACGGAGGAGACCTTATGTTCCACATACAGGAGAAGGGACGCTTCGACCTGTACAGAGCCACGTTCTACTCGGCTGAGATCATCTGTGGGTTACAGTTCCTGCACACGAAGGGCATCATCTACAGggATCTGAAGCTGGACAATGTGATGTTGGACAAAGATGGACACATAAAGATCGCTGACTTTGGGATGTGCAAGGAGAACATCCTGCTGGGACAGAAGTACTCTTTCTCGGTGGACTGGTGGTCGTTTGGCGTGCTGCTGTATGAGATGCTGATTGGCCAGTCCCCCTTCCACGGCGACGACGAGGACGAGCTGTTTGAGCTGGGCGTCACGGGCAACATCAGGGTGCACTCCTTCTTCAAGACCATCAACTGGACGGCCCTGGAGCGGAGGGAGGTGGACCCCCCCTTCAAACCCAAAGTGAAATCCCCCAGTGACTGCAGCAACTTCGACCGCGAGTTCCTGAGCGAGAAGCCGCGTCTGTCCCACAGCGACAAGAACTTCATCGACTCCATGGACCAGACGGCCTTCAGTGGCTTCTCCTTCATCAACCCACGCATGGAGCAGCTCATGGACAACTGATGGGCGGGGCCTGCGGGAGCCCCACCCGGCTCTCATCCTGCCCCACCCATCCAGGGCCTCCCCTGGCCCGGCTCGGTCTGCCCTCAGTGGGCCGGGCCTGTCCCGAGACATTCCCCCGCGGCGCAGAGGCAGCGGCGTGAGAGGGGCAGGGGCGCGGGGTGAGCATGGCGTTGGGGTGACAGTCCAGTTACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24674 lncRNA upstream 51723 53959463 ~ 53961838 (+) True G19887
TU24693 lncRNA upstream 64532 53948758 ~ 53949029 (+) False G19899
TU24680 lncRNA upstream 89507 53915125 ~ 53924054 (+) False AMCG00017331
TU24679 lncRNA upstream 98684 53912818 ~ 53914877 (+) True G19889
TU24615 lncRNA upstream 197485 53815845 ~ 53816076 (+) True G19838
TU24771 lncRNA downstream 23823 54056860 ~ 54057920 (+) True G19958
TU24827 lncRNA downstream 138178 54171215 ~ 54171423 (+) True G20006
TU24837 lncRNA downstream 283942 54316979 ~ 54392591 (+) True G20013
TU24855 lncRNA downstream 310365 54343402 ~ 54345777 (+) True G20028
TU24878 lncRNA downstream 409501 54442538 ~ 54444003 (+) False AMCG00017357
AMCG00017331 mRNA upstream 77079 53915154 ~ 53936482 (+) True AMCG00017331
AMCG00017324 mRNA upstream 130057 53876586 ~ 53883504 (+) True AMCG00017324
AMCG00017326 mRNA upstream 178654 53830871 ~ 53834907 (+) True AMCG00017326
AMCG00017330 mRNA upstream 192088 53817272 ~ 53821473 (+) True AMCG00017330
AMCG00017325 mRNA upstream 207765 53794794 ~ 53805796 (+) True AMCG00017325
AMCG00017336 mRNA downstream 3477 54036514 ~ 54056665 (+) True AMCG00017336
AMCG00017340 mRNA downstream 120570 54153607 ~ 54170510 (+) True AMCG00017340
AMCG00017347 mRNA downstream 172095 54205132 ~ 54208721 (+) True AMCG00017347
AMCG00017349 mRNA downstream 292299 54325336 ~ 54335011 (+) True AMCG00017349
AMCG00017354 mRNA downstream 302903 54335940 ~ 54343047 (+) True AMCG00017354
TU24688 other upstream 65943 53939537 ~ 53947618 (+) True G19896
TU24638 other upstream 148843 53864108 ~ 53864718 (+) True G19860
TU24632 other upstream 157722 53853907 ~ 53855839 (+) True G19854
TU24611 other upstream 213260 53794626 ~ 53800301 (+) False AMCG00017325
TU24604 other upstream 220867 53790547 ~ 53792694 (+) True G19829
TU24769 other downstream 21763 54054800 ~ 54055175 (+) True G19956
TU24774 other downstream 31321 54064358 ~ 54066187 (+) True G19961
TU24839 other downstream 274758 54307795 ~ 54318213 (+) False G20013
TU24970 other downstream 494715 54527752 ~ 54529204 (+) True G20099
TU24950 other downstream 540437 54573474 ~ 54582399 (+) True G20085

Expression Profile