RNA id: TU12954


Basic Information

Item Value
RNA id TU12954
length 287
RNA type TUCP
GC content 0.54
exon number 1
gene id G10420
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2710399 ~ 2710685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcagccagctctaggaagagtcctggtggttccaaacttcttccatttacggatgatggaggccactgtgctcattgggacctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12949 lncRNA downstream 7887 2696669 ~ 2702512 (-) True G10415
TU12929 lncRNA downstream 176323 2533341 ~ 2534076 (-) False AMCG00016024
TU12889 lncRNA downstream 284919 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 452684 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 459758 2250401 ~ 2250641 (-) True G10343
TU12966 lncRNA upstream 25496 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 38973 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 54809 2765494 ~ 2767457 (-) True G10440
TU12994 lncRNA upstream 73440 2784125 ~ 2846357 (-) True AMCG00016029
TU13003 lncRNA upstream 162539 2873224 ~ 2963628 (-) True G10464
AMCG00016027 mRNA downstream 38690 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 109922 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 155453 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 183122 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016023 mRNA downstream 195319 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016028 mRNA upstream 4284 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016029 mRNA upstream 74467 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 752981 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 787017 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 818157 3528842 ~ 3542536 (-) True AMCG00016046
TU13017 other upstream 323737 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 818567 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1197074 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5480861 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 8136149 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile