RNA id: TU12969


Basic Information

Item Value
RNA id TU12969
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G10435
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2749658 ~ 2749864 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAACTGTTTCAAGGAGTCTACGCCTGCGACCAGCTGCCTAAATTTAAGATCAAGAATTTACCTGCAATGTACATAATCAACACACACCCTAAAAATATGCCCGGAGAACATTGGCTGGCTATTTATCTAAGGGAGGACCACCGTGGTGAATTTTTTGATTCCTATGGAAACCCCCCGGATTTCAGACCTTTCCCTCGGAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12966 lncRNA downstream 13184 2736181 ~ 2736474 (-) True G10432
TU12949 lncRNA downstream 47146 2696669 ~ 2702512 (-) True G10415
TU12929 lncRNA downstream 215582 2533341 ~ 2534076 (-) False AMCG00016024
TU12889 lncRNA downstream 324178 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 491943 2257416 ~ 2257715 (-) True G10346
TU12977 lncRNA upstream 15630 2765494 ~ 2767457 (-) True G10440
TU12994 lncRNA upstream 34261 2784125 ~ 2846357 (-) True AMCG00016029
TU13003 lncRNA upstream 123360 2873224 ~ 2963628 (-) True G10464
TU13002 lncRNA upstream 169047 2918911 ~ 2963628 (-) False G10464
TU13013 lncRNA upstream 228133 2977997 ~ 2978208 (-) True G10474
AMCG00016028 mRNA downstream 33806 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 77949 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 149181 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 194712 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 222381 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016029 mRNA upstream 35288 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 713802 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 747838 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 778978 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 873054 3622918 ~ 3668558 (-) True AMCG00016047
TU12954 other downstream 38973 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 284558 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 779388 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1157895 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5441682 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 8096970 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile