RNA id: TU13023


Basic Information

Item Value
RNA id TU13023
length 877
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G10483
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3040371 ~ 3047869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCAAAACTATCCTTTCATTTTCAACCGCTTTACATCTGTTATTTTGCAGACCTTTTACTTGGATCAGAGTTGTTTCCAATTCAACTTGACATTGTCTTAAATAATTTCCTAATTGCTCTCTCTGTTCAATTAAGTCCTCTTTTTCAGCATGCAACACAATGACTTGTTTTCCACAAGTATCTAGCTTTCCTTCAAATTCTAAAACCATTCCATGCCGTTTGGCTCTTTCTTCTTTCGCTTTTGCATACTTTTCTCctagctttttcagtttttcaaactTGCTTATGCTCCAGTTCACTAACCTTGAGCTCGCAAGTGCTAAGTTAGCCATAACTTTCACCACCTCTATCGACTCTTTTTCGAGTTGCATCGTAGTGTCGTTTACCAACTGAGTTCGACGCGACTCTACTTCAAAGTCCAAACTGCCTAGGTGTCCAAGGAATTCAGGAATCTCTGTTCCTGGTACCTTAACAATCAATGCTTCACATGGGGACATTTGGGTAATCATTGTTTTGGCTATTCAGTAACAACCCAACAGAATAGTACTAGATTAATCACCTAATGACTCTAATGCCAACGCTTAGGATATCAACAATTTATCACAAGTAACTAAAACAGACTTAACCTTTTGTGACTTTGGAAACCATACACATACCACGTGGGCAATTCTagagtctgtaaagttcttatttaataaagtcctttaaaagaattattcgtatggctcaatctccttctcccagtttaactcttctgttgccggcaaagacttggttggtttctggttccggttctggcaacagagctacaggttgagctgtggcagcgagtttctggttcaggtgagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13013 lncRNA downstream 62163 2977997 ~ 2978208 (-) True G10474
TU13003 lncRNA downstream 76743 2873224 ~ 2963628 (-) True G10464
TU13002 lncRNA downstream 76743 2918911 ~ 2963628 (-) False G10464
TU12994 lncRNA downstream 194014 2784125 ~ 2846357 (-) True AMCG00016029
TU12977 lncRNA downstream 272914 2765494 ~ 2767457 (-) True G10440
TU13026 lncRNA upstream 37434 3085303 ~ 3085537 (-) True G10486
TU13074 lncRNA upstream 232621 3280490 ~ 3281193 (-) True G10529
TU13093 lncRNA upstream 323672 3371541 ~ 3371898 (-) True G10548
TU13101 lncRNA upstream 330509 3378378 ~ 3378585 (-) True G10556
TU13140 lncRNA upstream 442889 3490758 ~ 3547091 (-) True G10592
AMCG00016029 mRNA downstream 246925 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 324519 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 368662 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 439894 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 485425 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016041 mRNA upstream 415797 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 449833 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 480973 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 575049 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 735665 3783534 ~ 3784496 (-) True AMCG00016045
TU13017 other downstream 5188 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 329686 2710399 ~ 2710685 (-) True G10420
TU13149 other upstream 481383 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 859890 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5143677 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7798965 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7799062 10846931 ~ 10847811 (-) False AMCG00016176

Expression Profile