RNA id: TU14816


Basic Information

Item Value
RNA id TU14816
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G11996
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12238785 ~ 12239014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacctcattgttaagaaaaccacaagatcgtacagtttgtatgctgtaacaggaccagacatctgcctccatgATGGCCTCCTCCCtcgggaagggcagcctacaaactttccagagcttgcatcttttgaagcctttgactggatgaacggccacaagattctacACCATTTTCCTGTAAAGCTGTTTGTAagcattaagtcctcactgaaggaattccctgacgtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14772 lncRNA downstream 291463 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA downstream 330816 11890988 ~ 11907969 (-) False AMCG00016203
TU14679 lncRNA downstream 472208 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 500186 11738345 ~ 11738599 (-) True G11865
TU14652 lncRNA downstream 521368 11701591 ~ 11717417 (-) False G11858
TU14864 lncRNA upstream 114146 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 115661 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 148784 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 399479 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 858977 13097991 ~ 13100224 (-) True G12235
AMCG00016208 mRNA downstream 2263 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016204 mRNA downstream 295133 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016203 mRNA downstream 333951 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016200 mRNA downstream 352592 11868787 ~ 11886193 (-) True AMCG00016200
AMCG00016199 mRNA downstream 371916 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016210 mRNA upstream 25260 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016209 mRNA upstream 57839 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016211 mRNA upstream 85808 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016212 mRNA upstream 121561 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016217 mRNA upstream 234249 12473263 ~ 12499001 (-) True AMCG00016217
TU14520 other downstream 1390974 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1390974 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4044353 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8318361 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8699592 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 84147 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 623085 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 623085 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 630826 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1315571 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile