RNA id: TU15249


Basic Information

Item Value
RNA id TU15249
length 479
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G12359
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13627255 ~ 13639150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTAGGTTCTGTTTCTGCACTCATTGCGGTCCACATGTTAGAGGACATAGTTGTGACTGGAGTAGTGATTGTTGATGAGCCTACAGTTGTGTTAGGATTGCTAATGGTTTCTGTTGTTCTGGAAATAGTTGAATCAGTGACGGTGGATGTTAATAACATTACACTTTCTGTTTGGGAAGATGAAGATGTTGAGTGATCGGTTGTGTCAGGAGATGACATGGTGCTTGTTACAGTGGAACCTGTAGCTGTTGTGCTGGATTCTAGCATGGCTGAGGTTGACGACATGTTCGTTGTCATTGGCTGGCTGCTTACTGATGTTTCAGGTGTTCCAGTTGTGGTGGTGGCAGGATGTGTGGAAAACTCAGTTGTAGGTGAAATTAGAGATGTTGGAGATGGTGCAGTAGTTTGCAATGTTGTGGAGGATGAAGATTGACTTGTGGTTTCAGTAGTGTTTTGTGAGGAATTTGCTGTTATTATC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15219 lncRNA downstream 81537 13543348 ~ 13545718 (-) False AMCG00016246
TU15107 lncRNA downstream 527031 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 988557 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1235847 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1271891 12354675 ~ 12355364 (-) True G12046
TU15263 lncRNA upstream 18293 13657443 ~ 13659659 (-) True G12373
TU15533 lncRNA upstream 781271 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 788475 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 792462 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 792568 14431718 ~ 14436531 (-) False G12594
AMCG00016251 mRNA downstream 32104 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016245 mRNA downstream 44589 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016246 mRNA downstream 68444 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016247 mRNA downstream 84620 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 92280 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016252 mRNA upstream 15888 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 190610 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 220183 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016259 mRNA upstream 235585 13874735 ~ 13879998 (-) True AMCG00016259
AMCG00016262 mRNA upstream 273772 13912922 ~ 13921956 (-) True AMCG00016262
TU15220 other downstream 68071 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 756695 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 756695 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 764385 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1298222 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 1151053 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3219391 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3219391 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3219391 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5452089 19091239 ~ 19105381 (-) True G13367

Expression Profile