RNA id: TU15548


Basic Information

Item Value
RNA id TU15548
length 4814
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G12594
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14431612 ~ 14436531 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACTAAATATATGTTGAGATTACAGAGAAGTCTACGTTCCCTTTATGCctgcaaattgaaaataacaatttgtgCATGAATCGACAATTGTCTTaagtcacacacaaaaaggGAAGGCTTTCTCCTTTCCCAATAAAGTTATCTCTTTTGGAATTGGTTTTCGAGAAACTACAAAAATACCCTTAGATTGGCATAGTAATTCTGAGAGAAGGGAGATATTGatgtttctgtcacttctgCCTTTTGCCGTCTcagaattaatatttttctaatcACATTTCAATTTGTGGCTGAAACTTCCTTCTTGTTTTATATCAAAGAGATCTCCTGAAAATActttagcacacacacactctcacacagaaatgtatagcCTAAATCCTTTTACCCTACCCTAAATTACCCTAAAATAATTTTACTTGAATAACTTTGTACTATGTAGTCATATTAGGGGAGTCTGCTATACTTACTGAACACCCCATGCTTGGTGAGAAACAGTCTGGTTTTGATTTCAAGATTTTCTGACCAGTCCCGAATGGTTTATCTTAGGTTTCACATTGGCTTATCTTTTCAGATTTGAAACTATGCCCTGTGGAAGGTTTTAGACCAGTTTCAAGTCAATTCATCATCAATAACTAAACTTTTATGATTTCTCTTCTCTATCAACACATAAAATCTGCTGACATGAATGAAGACAAGGATAGGATgtttggaaagaaagaaaaaaagaatgaaagaaagaccTGGAACTTGTCCAAAACCTTTTCATGGGCCTAACTTATAAATCTGAAAAGACGAAGTCAATAAGAAATGAATGTGGAACCAGTGACAAATAAAGCTGGGACTGTGCCTCTTGCTTGACACACAACCAGCTACGTTTCTCAGTTGTCATCATTGGCTTTTCAAGTCCTGTACAGATGTTAGTGTGCCACACAATTCAACACACTTTTTGGGGGATAGTGGGCAGAATACAGGTTATTCTGTTAAAGCTAGACACTCCAAAGCTCAGCCACCATACCATCTCAAGCTAGTCTCCACAATGGCAGCATACATTGCTGTCATCTTGTTTGCAGTTTAGACTGAGACTCCGCGCAACACAGAAATCATGCTTACgaaatatcagttttaaatacttgaaagataaaatgcatttgatatcaATACTTGACCTTACAGCAGTCTTTGTAGCATCTAAATAGCTAATCCAAATGTGTGCTACTAGTTTCCTATGATAGCTAGTTTAataacacagacactgcactaATTTCTAGCTAGAAAAGgcttagttttctatttttatttaatagggTTCGTATTAAGcaatttttccttttctttttcttttttatttctgataaCCCTTGATGAAGGACCAGTCCAGTCCTTGTAGGTTATGAAATTTACTgtcagcataaaaaaaaagtttgtttttgaagaaaatcataattgcttcattttttgttttgtttgtttgtttgtttgttttctatttaaatggATCACCCAGGCATTCATTCCCTTTTCAAGTAACCTGTTACAACTATAATCCCAGTGTATGTTGTGTAAAGAATTCTGCCATTCCTCGTATACAGGTGGTGCATATATTTTGGGTGCATGTATCATGAGTGAGAATTCAGATTTCAGCAAAATGTTTCTCAATTATCCAGCCTGCTGTCATTCTTCTCTAAGGGGAGGATAGTCGCTAGCTGGTGACAACAGACACAATACAGCCTTCGTATGAAGTGTGACCTATTAAGAAGAAAGCATTGCCGTATCTGAAATTGCTTGAGGAACTTAATCCCTTGTTCTCTTTCACCATTACAGGACCACCAATACCACCAGCTTCTGCAGAAAATGGAATGTAGCCCAAACCcaatcattaaaaagaaaagtcttgtcaatatacatttgcacattaccatttgctttttaactttaaaaaacaaaacaaaaacaagattcGATGCAGTTACTTTCAGACGTGGTATCTCCCCAAACCTTAATTGTCCGAATTCTTCAGGAGTTCTGTAAAAGGGTGCGTCTCCATATATTTGTGTATGGCGTTAGTCTGACAATTTTTCAGACTGCATCTCACATCCAATTAATTAcgattccttaaaaaaaaaacacactaacaaaccaaaaacatcaaCCGAGATGCACAGAGAACCGCACCAGTTCGGTCTGTCCGACCCTGCGGAAGAATGACACCTAGTTTGCTGGAGCTGAAGTAGTGAAACATTTGTTAGTCTGTCCTTCTCACTGGTGCAATGCtaattttcttgtttcttgaaACAAGGAAATCTAtgtcatcctttttttttagGATCATACGTTCAGTTAATCTTTTACTTTCATTCCTTTTGTAAGattttctgtaaatgtgtttgtgagactttttgttttcatttgacacagttgtgtgtgtgcattaggAAATTGTCGtatctgcttttttttatatatgttgtgaTTTCTTTCTTCCCAACCTCGGAACCCTCTCTTGGGGGGCCAGTTTACTGGATTAAGACTGTTGTCAAAAAGCTCatatggagaagaaaaaaagtatcCTTGCTTAATTGTTAAGCAGATGAGCACTGAGAAACCCTGCACGCTTGTAGTACCATAGTTAATGCTTCACTGCTTCCAGGAGGATATATTCTCAAAGCAAATGCATCTCCTTTTTTTGGCCAATGTCTGCTGGGTATTTGCACAGTATTTGCATTTTGGAAAGAGGCCGcacagttttttgtgttttgcccTCTCCCTTTTTAACAGTTCCAAAGATGTCCTTTCTCTCCACAAACTGTAGactttttgcttgttttcttaaTGACAAagattgtttttggtttaatcTTGCATTCCCACTGTCTAACAAAGTCATACTGCATACTCTAACAGTGACATTTTGGTAAGGAATTATTAAGTTAACTTGAGTCAATTGCTTTCACTGATTTCCCTtcataacaaatacacaataacattGAAATGAAAGAGAACAGAATTGGAGCATCGCAGCCtggaaatatgttaaaatgtcattttttgaTAAGTAAAATTAAGTCCTGTAAAAGGGATTCATGGAATAGTCCCATTTTGTAATGTCCCTTTATAGTGAATTTGCAGAAGTCACTAAATTGTTCTTCTGCTAATGGCACTTACCCAGAAACTTCcctctgaaatgaaaaagactAAACAAAGGACCTTTCACATATTTCCTTTAAATAGCATACCagcaaagcacattttattaacaatcagaaaatgttatttcacGTAAATAAGCACAGAGCACCGCAGACTTGTTCGCTGTACATTACAATAAGTTGTTGATAAAACCATGCAGTTTTTTAGCAGACATTTGCCAAAGAAAAGGGGACAGTCTCttggaaaaaacaatacaaaccaaTAAAATGCATAGATTAGCAGTTGCACTGATCCTTTGTAGGGGCATTGATATTTTCAGGTAACAGATGTACTATATCAGCACAACTAATTTCTGACCAATACTTCTGGTGTTATTCTTATGACTTAAATCCTGTAGTGGGAATGGTGTAGAAAAACACTGACACCTTTAAATGCCtcttttaaaaagacaatatttGCACCTTAAATCCTTAACCAAAATATCTTATCACATTCTTCAAAGggttgtttccccccccccaccccatcacTGTTATTTTTGATGTTCACTAGATACTGTCAAACCCTTTGTCCTTCTGTCACCTGTTTGGGGGAAGCATCCATCTATGGAAATGaccttctattttatttttttgtatgtaaatatgaatgaaatTATTTTAGGCAAATTGTGTCAGTTAACCGATTATTTGACTCTTCTGGCatgaaatcagttttaaaaggaaaactaaaacaaatgcttgGTCCACAGATTTGTAATCCCACCCTGAAAAACCATCTTCCATTTTTTCTATATAGAAGATGCCTATATAAATCTAGAGTTCCTATATTAGttaaactattattaataatacccTTTGTGCTAGTACTGTCTCTTGAATGTAATGGATTTTGTacctgtatttttctatttacaaTTCAGTCTAAACTTTCTGATATGTGATGGCTTGTATATGGAGACGTTTTAGGGTGTTTACACAAGTTCATAGTTTGTTACGATGTATGGAGATAAGACGAGACAGATGCTGTACTGATAACTGGGGGATATCCGTGTTGACctgatttatgtaaatgtatctcTGAAATTaggacttttttctttcttaccaTGAAAAACAACTTAGTAGGTACTGCCCTGATTTAGACACCAAAAGGAAACTGGCAGCAAATTTCCTCATCTGAAGGGCAGGGCAAGGGAcatacttttatatattatgtataaaaaCTAAAGTAATTGCCAAACCCCctgtaattatataatttattttcatctgttgtttttttttctttttcatttatccAAATAGTCTTAACACCTGGATATACACCCAGAACGATTGATATATCTTAAATGCTCATTACAGGAATGTATGACAGGTGACTGATTGAGCAATGAAAGTGGTTCTCCAGATCTATGATGTATCTTCTTGAAAGTTTGTACATTGTGTGCGTGATCTAATTTATGGCAAAACGTACTGTATCATGATGTATATGGACCTGATTGTTACAGCCCAGTTGTACATGCAGCCTTGCCTTACTGACACCCTGATTAGAAAGGGACACCTTAGCCGTTTACTCCAGCCCGTTTTAATGAGTTATCTGTCATAACACTGTCTGCTGACGCAATTATTATTCCTTGAACACCTATTAAAATACCCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15536 lncRNA downstream 2901 14427625 ~ 14428817 (-) True G12585
TU15533 lncRNA downstream 4428 14420421 ~ 14427290 (-) False AMCG00016281
TU15263 lncRNA downstream 772059 13657443 ~ 13659659 (-) True G12373
TU15248 lncRNA downstream 792128 13638303 ~ 13639590 (-) False G12358
TU15550 lncRNA upstream 27086 14463617 ~ 14463823 (-) True G12595
TU15634 lncRNA upstream 350462 14786993 ~ 14788418 (-) False AMCG00016293
TU15717 lncRNA upstream 756671 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 980492 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 1110519 15547050 ~ 15605487 (-) True G12743
AMCG00016281 mRNA downstream 4482 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016283 mRNA downstream 38057 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016284 mRNA downstream 42239 14383900 ~ 14389479 (-) True AMCG00016284
AMCG00016280 mRNA downstream 107543 14306299 ~ 14324175 (-) True AMCG00016280
AMCG00016277 mRNA downstream 162403 14268166 ~ 14269315 (-) True AMCG00016277
AMCG00016282 mRNA upstream 857 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016287 mRNA upstream 141326 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016289 mRNA upstream 272857 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016293 mRNA upstream 348667 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016294 mRNA upstream 413319 14849850 ~ 14851113 (-) True AMCG00016294
TU15220 other downstream 872534 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1561158 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1561158 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1568848 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 2102685 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 353672 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2422010 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2422010 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2422010 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4654708 19091239 ~ 19105381 (-) True G13367

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU316866 True 4744 lncRNA 0.40 2 NC_047611.1 11863887 ~ 11868663 (+)