RNA id: TU15862


Basic Information

Item Value
RNA id TU15862
length 2766
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G12814
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15837835 ~ 15840792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGAAGACTAGAATGAAACCATTGGGTTATGCAAAGGTTTAATATCCAtttgaaaacagaacagaacagtgaATACATCTTTACATTAGTAACTGCAATTAATGGTTTATTCCATAggactgtttgtgttttataatgatGATGTATCCAAAATACGCTTTACAAAGAGAGGAATGATtattagctgatgctcttaccCAGGGTGATGTTTGCTAGAAAGGTTTTACCTTATAGTGTGCACACTATAATCAACAGATACACAACAAATCGGTAGATATAGAGAGACAGGAAATGGAAAACTGAAAGACTGCCTGTTCGAAGGTCTACGGCTGATCCTTTCCTGAGCAGTTCTCAGGTTGCTGCAGAATTTAAATCCACATAAAATCTTTCCATATCAAGGGAAACAGTAAAGAGACCTCAGAGAGAAGATGCAGAGTTGCATGTAAGAAAAAACTAGGAGGGATACTTGATAACGTTGCCAACAAAATAGGGCCTCCAGGAAAATATGGAGGCGGAAATGTTTTGGATTACTTTACACCTCAAGAGATGAATTGTGGgtgaatgattttgtttttcaacaggATGGTGACCCTTCACAGACTAAtatattaaatctaaattacaagaaagaaagaaaagaaagaaaaagaaaaccatacaTGTTGAAATTGATGCACTGATCTTTTCAGTTATTTActcatttaattagaaaaaggTTTACAGTAAAATTCCAGTAAACAATCtcatgtcacattttattagtcttatttacatttgtatccaAATCAGTCATTCTTCATTTTGTAGTTGTATTTCATTCACCATTTATTTCTACCAGTGCAGTGCTATTAAACTCTTGATGAATGTAGTGAGCTTCCCGCCTAATAGTAACAACTCGTGTGAGGTAACTGAAATAGACATCATCAGCATCTTCAGAAGATAAATGACgttgatggggaaaaaaaatactttgaacaGAAAGTGTAACATTTCTATTTGCATGCAATTGCCTTTTTTCTGTACCTTGCCCAGTACTGTCCCATAATGCAGTACAGAAATGTTTGTCAAATAAGAATCAAACCAGACACAAAAAAGACTACACCTAAACTTTACATAACATACTGAATCTGTGATTTAGTATCTGAGAAACATTGACATGTTCACACTATCCCATAAAGACAGACATGACTCATTGtaggaataataaaaaataatgtttaaagtttCCAGCACACAGGTGTATGATGACAACAGAAACAGCGATGCTGGTTTAGGGAAGCTGTGTTTCCAGCATTATTAGCGACCAGGAAAATGAGTCTGGGTTGTCGGTTGGAAATATAATCCTCAGCACTCAGAATGTGAGAACACTATAGTGCCGGAAGCCCATTGAAAACAAGTCGATAACTATTGATATGTGGATCGAgtcttacaaaacataaatggcTTTTCTCAATGCACGGACCATACTGAACTGTGCAtctctttttgtttaaattggaaACTCAGCCATTGCTTATTTAACCAggaaataatagcaataatagtTTCCATTAGAGTCCTTTATTTGGGGATGTATTGCAGCACTGATATTAATCTGAATCAGGTCTGAGATTTCTAAGTGGGCTGGGACCACTAACGGatacttaatttaatattttgtttgtataatttaaatgtgggggaaaaaaaaaaatcataatggtTTATCATGACCTTGTACTTAAATTGATATGTTCACTGTTTGATTAACTTGTTTGGCTGATGGCCAGAAAATTAGATTGTTACAGTCTGATTTTGAAGTGCTTCCTCTTGGATTCAGAGGCTTTGCAGCTCATTTCACGTTTCGTTCTTTGTAATTTCCAAACAGTATAGTAGGTATTTTAACTGTTACACAAACTGTCTTACATGAAATGTTACCGTGTCCTAGCTAATCCACAGGATAAATGCATGTCTCGATTCGTCACTGATTCACCTAAATGGCAAGAACACTATCACTGTGAACTACAATGCTACCTAAACAGTAACAGTagatttaatcaaatataatcGACTACATTGGTTAGGAATGTACTGTTGTTGCAGAGTCTAAAATGTTCTAAATATTGTCTATCCTGTCATAGGttacacaaaataacattaattttgacttgaaaatgtattttgacaaCTCAAACTGTATAGGTACTGCAAATCAGTAGTGATGAGGGTGAGGGCTACAGTGGATCAAATAATGCAAGTGCATTTCACCAACTGATGAATGTGTAATGGATGAGTGGTATTGTTTCcccataaataaatgtataataattaggTTGTTTTATGCCTATAGAGAGTGATACAACTAAGATGTAATCTGTCATGAGAGGATGGTTCTGTGAGAATGAAACGTGTGTCCAGATGGATTGTGACATGTAGCATTGTAAAGTACGATTTGTAAATGTCTAAGCAGGAAGACTTACATAGTCTGtgcttcaaaatgttttactaaaatgtgttatttgagtggtgtacattttttattattactgctgtaaagcatttttatcCAGTTGTGGATAGttggttaatttattaatttattaagtgtttttgcagaaataaagaaagatacaacaacaaaaaacacctctACTAACATTAATTTATGCTCTGTGTCTTGGTTTTGTGAAGCAATATGCAAGAATGTTACCATGGTAAAATATGGTACACTTGGGATACACATTTGCTTACTTGTTATTCCTGTATtattcaagacaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15860 lncRNA downstream 1367 15835194 ~ 15836468 (-) True G12812
TU15859 lncRNA downstream 2753 15834822 ~ 15835082 (-) True G12811
TU15858 lncRNA downstream 8268 15829355 ~ 15829567 (-) True G12810
TU15857 lncRNA downstream 8809 15828766 ~ 15829026 (-) True G12809
TU15855 lncRNA downstream 12598 15824911 ~ 15825237 (-) True G12807
TU15890 lncRNA upstream 382693 16223485 ~ 16223728 (-) True G12838
TU15928 lncRNA upstream 626825 16467617 ~ 16467819 (-) True G12867
TU15929 lncRNA upstream 627181 16467973 ~ 16468272 (-) True G12868
TU15930 lncRNA upstream 629819 16470611 ~ 16470959 (-) False AMCG00016327
TU15965 lncRNA upstream 754886 16595678 ~ 16596220 (-) True G12894
AMCG00016315 mRNA downstream 13569 15804860 ~ 15824266 (-) True AMCG00016315
AMCG00016317 mRNA downstream 79812 15742441 ~ 15758023 (-) True AMCG00016317
AMCG00016316 mRNA downstream 97489 15735096 ~ 15740346 (-) True AMCG00016316
AMCG00016309 mRNA downstream 213383 15621056 ~ 15624452 (-) True AMCG00016309
AMCG00016308 mRNA downstream 241035 15577433 ~ 15596800 (-) True AMCG00016308
AMCG00016319 mRNA upstream 467 15841259 ~ 15849112 (-) True AMCG00016319
AMCG00016321 mRNA upstream 49468 15890260 ~ 15902820 (-) True AMCG00016321
AMCG00016320 mRNA upstream 80305 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016318 mRNA upstream 216317 16057109 ~ 16061718 (-) True AMCG00016318
AMCG00016328 mRNA upstream 567563 16408355 ~ 16409278 (-) True AMCG00016328
TU15638 other downstream 1045866 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2278651 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 2967275 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 1017749 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 1017749 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 1017749 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3250447 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4294405 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile