RNA id: TU16261


Basic Information

Item Value
RNA id TU16261
length 492
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G13126
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17493855 ~ 17494346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agatcacacagtgtgttctagtgataaggagacccgcatggtatcttgcctgcctggtgctcaggttgcagatcttaACTTGTAGACAGGCTGCaggccaaagccagggggaatccactggtcatggtccacattggaaccaatgacatagggaagggtagggcagaggttctgcaagacaaatttaaagagttaggaactaaactaaagagcagaacctccatggtagttttctctgaaatacttccggtaccacgtgcatggccagggtgacaggcagagattagaaaatttaacacgtggttgaaatcttggtgtaggaaAGAGGGGTTtgggtttatggagcattggtctttcttctgggatagatgggagcTGGATgtaaaccggacggtctacatctaaacagaggGGGAGCtgatgcattgggagagcatatgtgcagagtaattgagaatcttttaaactagggaccaggggggcagggagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16213 lncRNA downstream 116316 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 207026 17284403 ~ 17286829 (-) True G13065
TU16168 lncRNA downstream 227720 17263601 ~ 17266135 (-) False AMCG00016360
TU16151 lncRNA downstream 247525 17241944 ~ 17246330 (-) True G13045
TU16264 lncRNA upstream 1577 17495923 ~ 17496347 (-) True G13129
TU16302 lncRNA upstream 43688 17538034 ~ 17540345 (-) False AMCG00016376
TU16425 lncRNA upstream 668441 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1331848 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1564059 19058405 ~ 19058673 (-) True G13339
AMCG00016375 mRNA downstream 3436 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 20924 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016367 mRNA downstream 33369 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016368 mRNA downstream 80255 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016361 mRNA downstream 198980 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016374 mRNA upstream 9534 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016376 mRNA upstream 43692 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016381 mRNA upstream 183784 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016384 mRNA upstream 202583 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016385 mRNA upstream 221422 17715768 ~ 17716983 (-) True AMCG00016385
TU16024 other downstream 632676 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 632676 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 632676 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2701886 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3934671 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1596893 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2640851 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5960746 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6204803 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6816691 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile