RNA id: TU16264


Basic Information

Item Value
RNA id TU16264
length 425
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G13129
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17495923 ~ 17496347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAAGcattatatttatacagctctggaaaatattaagagaccactgcacatttttcttaaatcaccatctctacatgtatggcagccattccattccagtgtctgttgaattccaacacaagCACACCTCGTActactgaatgagctactgattaggtgatcacctgaaccaaatcttatttaacgtgGAAAAGTAtcaaaaccactgctgtggtcatcactatcctcttgcaataggaccagctggatggcaaaaacagtgctagtagtacctcaaaagtaattggaataaaaaataactattgaccatgccaaaacagttgaaaaggaaagttgtgagtgaggaaaagaagggttcaattctggctttactggcagagggatacagtgagcgttgggttgcttccatccttaaaatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16261 lncRNA downstream 1577 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 118384 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 209094 17284403 ~ 17286829 (-) True G13065
TU16168 lncRNA downstream 229788 17263601 ~ 17266135 (-) False AMCG00016360
TU16154 lncRNA downstream 249593 17241944 ~ 17246330 (-) False G13045
TU16302 lncRNA upstream 41687 17538034 ~ 17540345 (-) False AMCG00016376
TU16425 lncRNA upstream 666440 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1329847 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1562058 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1581021 19077368 ~ 19077823 (-) True G13341
AMCG00016375 mRNA downstream 5504 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 22992 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016367 mRNA downstream 35437 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016368 mRNA downstream 82323 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016361 mRNA downstream 201048 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016374 mRNA upstream 7533 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016376 mRNA upstream 41691 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016381 mRNA upstream 181783 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016384 mRNA upstream 200582 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016385 mRNA upstream 219421 17715768 ~ 17716983 (-) True AMCG00016385
TU16024 other downstream 634744 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 634744 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 634744 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2703954 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3936739 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1594892 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2638850 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5958745 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6202802 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6814690 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU353646 True 1135 lncRNA 0.38 2 NW_019171639.1 279140 ~ 280302 (-)